| Gene ID | Ptp.2463.1.S1_a_at |
| Gene name | hypothetical protein |
| Homology with Arabidopsis | Similar to At3g04720: PR4 (PATHOGENESIS-RELATED 4) (HF=3e-2) |
| Module size | 6 genes |
| NF | 0.60 |
| %ile | 90.5 |
| VF | %ile | CC | Gene ID | Repr. ID | Gene name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.83 | 97.0 | 0.93 | Ptp.2463.1.S1_a_at | CV257616 | hypothetical protein | - | 3e-2 | At3g04720 | PR4 (PATHOGENESIS-RELATED 4) | O.I. | H.G. | S.X. | |
| 0.67 | 91.1 | 0.92 | Ptp.2463.1.S1_s_at | CV257616 | hypothetical protein | - | 3e-2 | At3g04720 | PR4 (PATHOGENESIS-RELATED 4) | O.I. | H.G. | S.X. | |
| 0.55 | 82.2 | 0.94 | PtpAffx.147241.1.A1_s_at | CV244318 | hypothetical protein | - | 2e+0 | At5g51650 | unknown protein | O.I. | H.G. | S.X. | |
| 0.46 | 73.7 | 0.93 | Ptp.2344.1.A1_x_at | CV243674 | hypothetical protein | - | 2e-4 | At1g71695 | peroxidase 12 (PER12) (P12) (PRXR6) | O.I. | H.G. | S.X. | |
| 0.46 | 73.7 | 0.93 | Ptp.2344.1.A1_at | CV243674 | hypothetical protein | - | 2e-4 | At1g71695 | peroxidase 12 (PER12) (P12) (PRXR6) | O.I. | H.G. | S.X. | |
| 0.44 | 71.9 | 0.92 | PtpAffx.42700.1.A1_at | BP934666 | hypothetical protein | - | 5e+0 | At4g03050 | AOP3 | O.I. | H.G. | S.X. |
| Std2 GX | %ile | GSM ID | Assay name | GSE ID | Experiment title | Link to GEO |
|---|---|---|---|---|---|---|
| 3.7 | 94.7 | GSM244436 | Mmd infected tissue, biological rep1 | GSE9673 | Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi | |
| 3.5 | 94.3 | GSM244437 | Mmd infected tissue, biological rep2 | GSE9673 | Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi | |
| 3.4 | 94.0 | GSM244432 | non infected tissue, biological rep3 | GSE9673 | Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi | |
| 3.2 | 93.5 | GSM244434 | Mlp infected tissue, biological rep2 | GSE9673 | Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi | |
| 2.5 | 90.9 | GSM244440 | Mixed infected tissue, biological rep2 | GSE9673 | Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi | |
| 2.5 | 90.9 | GSM136938 | Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose | GSE5887 | Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere | |
| 2.4 | 90.4 | GSM244441 | Mixed infected tissue, biological rep3 | GSE9673 | Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi | |
| 2.0 | 88.0 | GSM244439 | Mixed infected tissue, biological rep1 | GSE9673 | Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi | |
| 1.8 | 86.4 | GSM136936 | Poplar in 1 x hrp + 0.25 % sucrose no bacteria | GSE5887 | Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere | |
| 1.8 | 86.4 | GSM244438 | Mmd infected tissue, biological rep3 | GSE9673 | Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi | |
| VF | %ile | Gene ID | Repr. ID | Gene Name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.73 | 91.1 | Os11g0592200 | At3g04720 | - | Barwin domain containing protein | 8e-2 | At3g04720 | PR4 (PATHOGENESIS-RELATED 4) | O.I. | H.G. | S.X. | |
| 0.50 | 68.0 | Os12g0630200 | At3g04720 | - | Antifungal protein R (Fragment) | 1e-1 | At3g55880 | unknown protein | O.I. | H.G. | S.X. | |
| 0.50 | 68.0 | Os11g0592000 | At3g04720 | - | Barwin | 7e-3 | At3g04720 | PR4 (PATHOGENESIS-RELATED 4) | O.I. | H.G. | S.X. | |
| 0.46 | 60.9 | Os04g0494100 | At3g04720 | - | Endochitinase A precursor (EC 3.2.1.14) (Seedchitinase A) | 1e-1 | At2g43590 | chitinase, putative | O.I. | H.G. | S.X. | |
| 0.22 | 19.4 | Os03g0663500 | At3g04720 | - | Thaumatin, pathogenesis-related family protein | 7e+0 | At3g25400 | - | O.I. | H.G. | S.X. | |
| 0.20 | 16.5 | Os01g0382400 | At3g04720 | - | Pathogenesis-related protein PRB1-2 precursor | 1e-1 | At3g09590 | pathogenesis-related protein, putative | O.I. | H.G. | S.X. |
| Arabidopsis_thaliana |
| Glycine_max |
| Hordeum_vulgare |
| Triticum_aestivum |
| Vitis_vinifera |
| Zea_mays |
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