Co-expression analysis

Gene ID	Ptp.2463.1.S1_a_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g04720: PR4 (PATHOGENESIS-RELATED 4) (HF=3e-2)
Module size	6 genes
NF	0.60
%ile	90.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	97.0	0.93	Ptp.2463.1.S1_a_at	CV257616	hypothetical protein	-	3e-2	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.92	Ptp.2463.1.S1_s_at	CV257616	hypothetical protein	-	3e-2	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.94	PtpAffx.147241.1.A1_s_at	CV244318	hypothetical protein	-	2e+0	At5g51650	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.93	Ptp.2344.1.A1_x_at	CV243674	hypothetical protein	-	2e-4	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.93	Ptp.2344.1.A1_at	CV243674	hypothetical protein	-	2e-4	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.92	PtpAffx.42700.1.A1_at	BP934666	hypothetical protein	-	5e+0	At4g03050	AOP3	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	94.7	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.5	94.3	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.4	94.0	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.2	93.5	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5	90.9	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5	90.9	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.4	90.4	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0	88.0	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.8	86.4	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.8	86.4	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

A co-expression module including the barley gene, Contig6576_at, orthologous to the query gene, Ptp.2463.1.S1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	Contig6576_at	At3g04720	-	-	6e-6	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	O.I.	H.G.	S.X.	Please select
0.47	62.2	Contig3772_at	At3g04720	-	-	1e-1	At3g16240	DELTA-TIP	O.I.	H.G.	S.X.	Please select
0.36	47.1	Contig8241_at	At3g04720	-	-	1e+0	At4g19390	-	O.I.	H.G.	S.X.	Please select
0.35	45.1	Contig6767_s_at	At3g04720	-	-	2e-11	At1g13640	phosphatidylinositol 3- and 4-kinase family protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig12257_at	At3g04720	-	-	2e-34	At5g51070	ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1)	O.I.	H.G.	S.X.	Please select
0.33	42.6	HM02H15u_s_at	At3g04720	-	-	5e+0	At2g16030	methyltransferase	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig5351_at	At3g04720	-	-	2e-1	At1g48450	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig3024_at	At3g04720	-	-	3e+0	At3g13310	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	Contig8826_at	At3g04720	-	-	4e+0	At3g58830	haloacid dehalogenase (HAD) superfamily protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig3559_at	At3g04720	-	-	1e-86	At1g24510	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig9554_s_at	At3g04720	-	-	8e-8	At4g01560	MEE49 (maternal effect embryo arrest 49)	O.I.	H.G.	S.X.	Please select
0.20	21.1	HX03D08u_s_at	At3g04720	-	-	6e-1	At1g04960	-	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig3120_at	At3g04720	-	-	4e-2	At4g20260	DREPP plasma membrane polypeptide family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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