Co-expression analysis

Gene ID	Ptp.2448.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g24830: 60S ribosomal protein L13A (RPL13aB) (HF=5e-57)
Module size	6 genes
NF	0.65
%ile	93.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	93.6	0.97	Ptp.2448.1.S1_at	CV233899	hypothetical protein	-	5e-57	At3g24830	60S ribosomal protein L13A (RPL13aB)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.98	Ptp.5621.1.S1_s_at	CV231534	hypothetical protein	-	2e-89	At3g48930	EMB1080 (embryo defective 1080)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.98	Ptp.1464.2.S1_x_at	CV281077	-	-	3e-40	At2g47610	60S ribosomal protein L7A (RPL7aA)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	0.97	Ptp.2109.1.A1_at	CV240599	-	-	8e-46	At3g12390	nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.97	Ptp.6777.2.S1_s_at	CX654265	hypothetical protein	-	3e-15	At5g28060	40S ribosomal protein S24 (RPS24B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.98	Ptp.1464.2.S1_at	CV281077	-	-	3e-40	At2g47610	60S ribosomal protein L7A (RPL7aA)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.7	99.1	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.5	96.1	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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