Co-expression analysis

Gene ID Ptp.2447.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g10140: FLC (FLOWERING LOCUS C) (HF=1e+1)
Module size 6 genes
NF 0.45
%ile 74.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7393.60.90Ptp.2447.1.S1_atCK093683hypothetical protein-1e+1At5g10140FLC (FLOWERING LOCUS C)O.I.H.G.S.X.
0.6187.00.92PtpAffx.138857.1.A1_atBP930260cytochrome P450-4e+0At3g04040unknown proteinO.I.H.G.S.X.
0.6086.00.92PtpAffx.146622.1.A1_atCV269348--3e-2At2g27690CYP94C1O.I.H.G.S.X.
0.5784.20.90PtpAffx.132618.1.S1_atBP922442cytochrome P450-2e-8At5g63450CYP94B1O.I.H.G.S.X.
0.3357.50.89Ptp.3948.1.S1_atDN488621hypothetical protein-1e-38At4g25810XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6)O.I.H.G.S.X.
0.2034.60.88PtpAffx.204806.1.S1_atpmrna9474hypothetical protein-2e-2At5g12340unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.096.6GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.794.7GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.694.5GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.892.1GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.389.8GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.188.6GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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