Co-expression analysis

Gene ID	Ptp.2432.1.S1_a_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g27745: - (HF=4e-19)
Module size	6 genes
NF	0.13
%ile	25.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	84.9	0.91	Ptp.2432.1.S1_a_at	CK093484	hypothetical protein	-	4e-19	At4g27745	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.91	PtpAffx.221207.1.S1_at	pmrna37916	cytochrome P450	-	7e-1	At4g37310	CYP81H1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.91	Ptp.2035.1.S1_s_at	BU894397	hypothetical protein	-	3e-21	At4g24060	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.90	PtpAffx.25959.1.S1_at	DN498122	hypothetical protein	-	2e+0	At5g20160	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.90	PtpAffx.7399.1.S1_at	CV242228	hypothetical protein	-	2e-12	At4g23980	ARF9 (AUXIN RESPONSE FACTOR 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.90	PtpAffx.49841.1.A1_at	CV243029	hypothetical protein	-	9e-24	At2g24260	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.2	95.6	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.6	94.5	GSM372044	Clone1979_LPI5_N+_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.0	92.9	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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