CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ptp.2344.1.A1_x_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At1g71695: peroxidase 12 (PER12) (P12) (PRXR6) (HF=2e-4)

Module size 6 genes

NF 0.65

%ile 93.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 0.94 Ptp.2344.1.A1_x_at CV243674 hypothetical protein - 2e-4 At1g71695 peroxidase 12 (PER12) (P12) (PRXR6) O.I. H.G. S.X.
0.80 96.0 0.94 PtpAffx.54956.1.A1_s_at BP934948 hypothetical protein - 5e-4 At1g71695 peroxidase 12 (PER12) (P12) (PRXR6) O.I. H.G. S.X.
0.80 96.0 0.95 Ptp.2344.1.A1_at CV243674 hypothetical protein - 2e-4 At1g71695 peroxidase 12 (PER12) (P12) (PRXR6) O.I. H.G. S.X.
0.67 91.1 0.96 PtpAffx.35633.1.A1_at CV274877 nbs-lrr resistance protein - 1e-1 At5g35610 paired amphipathic helix repeat-containing protein O.I. H.G. S.X.
0.36 61.6 0.96 PtpAffx.138996.1.S1_at CX182529 nbs-lrr resistance protein - 9e-15 At5g04720 ADR1-L2 (ADR1-like 2) O.I. H.G. S.X.
0.30 52.0 0.94 Ptp.4795.1.S1_s_at CA925817 nbs-lrr resistance protein - 2e-3 At5g04720 ADR1-L2 (ADR1-like 2) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.8 92.1 GSM244437 Mmd infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6 91.3 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM244436 Mmd infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2 89.3 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.1 88.6 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the grape gene, 1609321_at, orthologous to the query gene, Ptp.2344.1.A1_x_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 72.7 1609321_at At1g71695 hypothetical protein LOC100241916 - 7e-7 At1g71695 peroxidase 12 (PER12) (P12) (PRXR6) O.I. H.G. S.X.
0.36 50.7 1616929_at At1g71695 - - 1e+0 At5g65050 AGL31 (AGAMOUS LIKE MADS-BOX PROTEIN 31) O.I. H.G. S.X.
0.15 15.6 1621243_at At1g71695 hypothetical protein LOC100257019 - 1e+0 At3g06310 NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein O.I. H.G. S.X.
0.07 7.8 1617912_at At1g71695 hypothetical protein LOC100259655 - 3e-5 At3g53990 universal stress protein (USP) family protein O.I. H.G. S.X.
0.03 4.2 1609603_s_at At1g71695 hypothetical protein LOC100241051 - 1e-71 At1g31340 RUB1 (RELATED TO UBIQUITIN 1) O.I. H.G. S.X.
0.01 2.1 1622320_at At1g71695 - - 2e+1 At5g05113 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays

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