Co-expression analysis

Gene ID	Ptp.2344.1.A1_x_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g71695: peroxidase 12 (PER12) (P12) (PRXR6) (HF=2e-4)
Module size	6 genes
NF	0.65
%ile	93.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.94	Ptp.2344.1.A1_x_at	CV243674	hypothetical protein	-	2e-4	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	0.94	PtpAffx.54956.1.A1_s_at	BP934948	hypothetical protein	-	5e-4	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	0.95	Ptp.2344.1.A1_at	CV243674	hypothetical protein	-	2e-4	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.96	PtpAffx.35633.1.A1_at	CV274877	nbs-lrr resistance protein	-	1e-1	At5g35610	paired amphipathic helix repeat-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.96	PtpAffx.138996.1.S1_at	CX182529	nbs-lrr resistance protein	-	9e-15	At5g04720	ADR1-L2 (ADR1-like 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.94	Ptp.4795.1.S1_s_at	CA925817	nbs-lrr resistance protein	-	2e-3	At5g04720	ADR1-L2 (ADR1-like 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.8	92.1	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6	91.3	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2	89.3	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.1	88.6	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.110390.1.S1_at, orthologous to the query gene, Ptp.2344.1.A1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.6	TaAffx.110390.1.S1_at	At1g71695	-	-	1e-3	At1g44970	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.33	46.9	TaAffx.143995.17.S1_s_at	At1g71695	MADS-box protein TaVRT-1	-	1e-3	At5g60910	AGL8 (agamous-like 8)	O.I.	H.G.	S.X.	Please select
0.30	40.9	TaAffx.105340.1.S1_at	At1g71695	-	-	2e-1	Atcg00440	-	O.I.	H.G.	S.X.	Please select
0.27	35.6	TaAffx.49829.1.S1_at	At1g71695	-	-	5e-2	At2g39320	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.16393.1.S1_at	At1g71695	-	-	3e+0	At4g19080	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.27414.1.S1_at	At1g71695	-	-	1e+1	At5g26890	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.9846.1.A1_at	At1g71695	-	-	2e-21	At1g31800	CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3)	O.I.	H.G.	S.X.	Please select
0.20	24.0	TaAffx.114365.1.S1_at	At1g71695	-	-	7e-5	At5g49890	CLC-C (CHLORIDE CHANNEL C)	O.I.	H.G.	S.X.	Please select
0.19	22.4	TaAffx.92706.1.A1_at	At1g71695	MADS-box transcription factor TaAGL10	-	3e-1	At3g17890	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	TaAffx.120063.1.S1_at	At1g71695	MADS-box transcription factor TaAGL10	-	4e-7	At5g60910	AGL8 (agamous-like 8)	O.I.	H.G.	S.X.	Please select
0.17	19.8	Ta.963.2.A1_at	At1g71695	-	-	3e-4	At1g27320	AHK3 (ARABIDOPSIS HISTIDINE KINASE 3)	O.I.	H.G.	S.X.	Please select
0.17	19.8	Ta.6049.2.S1_a_at	At1g71695	-	-	3e-16	At4g24280	cpHsc70-1 (chloroplast heat shock protein 70-1)	O.I.	H.G.	S.X.	Please select
0.16	18.2	Ta.9616.1.S1_a_at	At1g71695	-	-	5e+0	At3g01950	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	TaAffx.27045.3.S1_s_at	At1g71695	-	-	5e-6	At4g29080	PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.15	17.1	TaAffx.120063.2.S1_s_at	At1g71695	MADS-box transcription factor TaAGL10	-	3e-7	At5g60910	AGL8 (agamous-like 8)	O.I.	H.G.	S.X.	Please select
0.14	15.8	TaAffx.56948.1.S1_at	At1g71695	-	-	7e-2	At3g19450	ATCAD4	O.I.	H.G.	S.X.	Please select
0.14	15.8	TaAffx.117057.1.S1_s_at	At1g71695	-	-	3e-9	At4g39960	DNAJ heat shock family protein	O.I.	H.G.	S.X.	Please select
0.13	14.6	TaAffx.120941.3.S1_x_at	At1g71695	-	-	1e+1	At4g34620	SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16)	O.I.	H.G.	S.X.	Please select
0.13	14.6	TaAffx.26686.1.S1_at	At1g71695	-	-	4e+0	At4g37790	HAT22	O.I.	H.G.	S.X.	Please select
0.12	13.3	Ta.5193.1.S1_at	At1g71695	-	-	1e-8	At3g05600	epoxide hydrolase, putative	O.I.	H.G.	S.X.	Please select
0.12	13.3	TaAffx.3767.2.S1_s_at	At1g71695	-	-	1e+0	At4g37290	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	12.4	Ta.1908.2.S1_a_at	At1g71695	GTP cyclohydrolase 1 isoform TaC /// GTP cyclohydrolase 1 isoform TaA	-	2e-5	At3g07270	GTP cyclohydrolase I	O.I.	H.G.	S.X.	Please select
0.10	11.3	Ta.4315.2.S1_a_at	At1g71695	-	-	9e-2	At2g21170	TIM (TRIOSEPHOSPHATE ISOMERASE)	O.I.	H.G.	S.X.	Please select
0.09	10.4	TaAffx.99049.1.A1_at	At1g71695	-	-	1e+0	At3g01390	VMA10 (VACUOLAR MEMBRANE ATPASE 10)	O.I.	H.G.	S.X.	Please select
0.09	10.4	Ta.4866.2.S1_a_at	At1g71695	-	-	2e+0	At1g04778	unknown protein	O.I.	H.G.	S.X.	Please select
0.08	9.4	TaAffx.98560.1.S1_at	At1g71695	-	-	3e-7	At5g17530	phosphoglucosamine mutase family protein	O.I.	H.G.	S.X.	Please select
0.07	8.6	Ta.28228.1.S1_at	At1g71695	-	-	4e-12	At1g62750	SCO1 (SNOWY COTYLEDON 1)	O.I.	H.G.	S.X.	Please select
0.07	8.6	Ta.27135.1.S1_at	At1g71695	-	-	1e-74	At4g37930	SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.06	7.6	Ta.1395.1.S1_at	At1g71695	leucine zipper protein zip1	-	8e-100	At3g56940	CRD1 (COPPER RESPONSE DEFECT 1)	O.I.	H.G.	S.X.	Please select
0.06	7.6	TaAffx.123343.3.S1_at	At1g71695	-	-	7e-2	At2g40210	AGL48 (AGAMOUS-LIKE 48)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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