Co-expression analysis

Gene ID	Ptp.2344.1.A1_x_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g71695: peroxidase 12 (PER12) (P12) (PRXR6) (HF=2e-4)
Module size	6 genes
NF	0.65
%ile	93.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.94	Ptp.2344.1.A1_x_at	CV243674	hypothetical protein	-	2e-4	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	0.94	PtpAffx.54956.1.A1_s_at	BP934948	hypothetical protein	-	5e-4	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	0.95	Ptp.2344.1.A1_at	CV243674	hypothetical protein	-	2e-4	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.96	PtpAffx.35633.1.A1_at	CV274877	nbs-lrr resistance protein	-	1e-1	At5g35610	paired amphipathic helix repeat-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.96	PtpAffx.138996.1.S1_at	CX182529	nbs-lrr resistance protein	-	9e-15	At5g04720	ADR1-L2 (ADR1-like 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.94	Ptp.4795.1.S1_s_at	CA925817	nbs-lrr resistance protein	-	2e-3	At5g04720	ADR1-L2 (ADR1-like 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.8	92.1	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6	91.3	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2	89.3	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.1	88.6	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the barley gene, Contig12944_at, orthologous to the query gene, Ptp.2344.1.A1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	Contig12944_at	At1g71695	-	-	2e-3	At1g44970	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.46	61.0	Contig876_at	At1g71695	-	-	3e+0	At2g05270	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	Contig10621_at	At1g71695	-	-	4e-1	At1g14315	-	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig2622_at	At1g71695	-	-	4e-3	At1g18140	LAC1 (Laccase 1)	O.I.	H.G.	S.X.	Please select
0.39	50.5	Contig15213_at	At1g71695	-	-	1e-1	At4g27745	-	O.I.	H.G.	S.X.	Please select
0.39	50.5	Contig5857_at	At1g71695	-	-	2e-1	At1g02965	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	Contig17612_at	At1g71695	-	-	1e+0	At1g01910	anion-transporting ATPase, putative	O.I.	H.G.	S.X.	Please select
0.35	45.1	Contig17788_at	At1g71695	-	-	1e+1	At4g11760	LCR17 (Low-molecular-weight cysteine-rich 17)	O.I.	H.G.	S.X.	Please select
0.32	40.3	HVSMEm0011D16r2_x_at	At1g71695	-	-	7e-2	At5g57290	60S acidic ribosomal protein P3 (RPP3B)	O.I.	H.G.	S.X.	Please select
0.31	38.6	Contig10032_at	At1g71695	-	-	7e-3	At5g09850	transcription elongation factor-related	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig23092_at	At1g71695	-	-	5e+0	At5g33210	SRS8 (SHI-RELATED SEQUENCE 8)	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig9219_at	At1g71695	-	-	1e+1	At5g65130	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig6884_s_at	At1g71695	-	-	9e-5	At4g34100	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig10218_at	At1g71695	-	-	2e+0	At2g44820	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	Contig6546_at	At1g71695	-	-	8e+0	At5g02780	In2-1 protein, putative	O.I.	H.G.	S.X.	Please select
0.23	26.1	Contig6509_at	At1g71695	-	-	4e-21	At5g12040	carbon-nitrogen hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	Contig19726_at	At1g71695	-	-	3e-4	At2g18410	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	Contig4758_at	At1g71695	-	-	2e-4	At5g35330	MBD02 (METHYL-CPG-BINDING DOMAIN PROTEIN 02)	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig3178_s_at	At1g71695	-	-	5e-35	At2g27020	PAG1	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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