Co-expression analysis

Gene ID Ptp.2344.1.A1_x_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g71695: peroxidase 12 (PER12) (P12) (PRXR6) (HF=2e-4)
Module size 6 genes
NF 0.65
%ile 93.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.94Ptp.2344.1.A1_x_atCV243674hypothetical protein-2e-4At1g71695peroxidase 12 (PER12) (P12) (PRXR6)O.I.H.G.S.X.
0.8096.00.94PtpAffx.54956.1.A1_s_atBP934948hypothetical protein-5e-4At1g71695peroxidase 12 (PER12) (P12) (PRXR6)O.I.H.G.S.X.
0.8096.00.95Ptp.2344.1.A1_atCV243674hypothetical protein-2e-4At1g71695peroxidase 12 (PER12) (P12) (PRXR6)O.I.H.G.S.X.
0.6791.10.96PtpAffx.35633.1.A1_atCV274877nbs-lrr resistance protein-1e-1At5g35610paired amphipathic helix repeat-containing proteinO.I.H.G.S.X.
0.3661.60.96PtpAffx.138996.1.S1_atCX182529nbs-lrr resistance protein-9e-15At5g04720ADR1-L2 (ADR1-like 2)O.I.H.G.S.X.
0.3052.00.94Ptp.4795.1.S1_s_atCA925817nbs-lrr resistance protein-2e-3At5g04720ADR1-L2 (ADR1-like 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.892.1GSM244437Mmd infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.691.3GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM244436Mmd infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.289.3GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.188.6GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM328292Populus x canescens root control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g71695, orthologous to the query gene, Ptp.2344.1.A1_x_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.4050.8At1g71695843498peroxidase 12 (PER12) (P12) (PRXR6)F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall, vacuole, membrane, plant-type cell wall;PFOBO.I.H.G.S.X.
0.3541.6At4g21750828263ATML1 (MERISTEM LAYER 1)Encodes a homeobox protein similar to GL2. It is expressed in both the apical and basal daughter cells of the zygote as well as their progeny. Expression is detected starting the two-celled stage of embryo development and is later restricted to the outermost, epidermal cell layer from its inception. Its promoter is highly modular with each region contributing to specific aspects of the gene's spatial and temporal expression. Double mutant analysis with PDF2, another L1-specific gene, suggests that their functions are partially redundant and the absence of both of the genes result in abnormal shoot development.O.I.H.G.S.X.
0.2930.3At4g00180827914YAB3 (YABBY3)YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.O.I.H.G.S.X.
0.2930.3At4g04890825828PDF2 (PROTODERMAL FACTOR 2)Encodes a homeodomain protein that is expressed in the LI layer of the vegetative, floral and inflorescence meristems. Binds to the L1 box promoter element which is required in some proteins for L1 specific expression.O.I.H.G.S.X.
0.1811.4At2g45470819155FLA8 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 8)F:unknown;P:unknown;C:anchored to plasma membrane, apoplast, plasma membrane, anchored to membrane, plant-type cell wall;OBPMVFAO.I.H.G.S.X.
0.1811.4At4g00400828140GPAT8 (glycerol-3-phosphate acyltransferase 8)Involved in cutin assembly. Is functional redundant of GPAT4.O.I.H.G.S.X.
0.168.8At2g45970819205CYP86A8Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at moderate levels in flowers, leaves, roots and stems.O.I.H.G.S.X.
0.157.8At5g13140831153-F:molecular_function unknown;P:biological_process unknown;C:unknown;PMOO.I.H.G.S.X.
0.071.9At4g32570829392TIFY8 (TIFY DOMAIN PROTEIN 8)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.H.G.S.X.
0.071.9At1g55360841982unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PFBO.I.H.G.S.X.
0.061.4At3g28040822428leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.

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