Co-expression analysis

Gene ID	Ptp.2263.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g15270: - (HF=2e-27)
Module size	6 genes
NF	0.47
%ile	76.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	93.6	0.96	Ptp.2263.1.S1_s_at	CV272257	hypothetical protein	-	2e-27	At1g15270	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.96	Ptp.5471.1.S1_s_at	CV270452	hypothetical protein	-	7e-34	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.97	PtpAffx.3872.1.S1_a_at	CV262411	hypothetical protein	-	1e-11	At5g47120	ATBI1 (BAX INHIBITOR 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.96	PtpAffx.249.137.S1_s_at	CV228047	hypothetical protein	-	7e-171	At4g05320	UBQ10 (POLYUBIQUITIN 10)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.97	PtpAffx.33439.1.A1_s_at	CK088001	hypothetical protein	-	2e+0	At5g46870	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.96	PtpAffx.52603.1.S1_s_at	CF236661	hypothetical protein	-	7e-5	At1g51650	ATP synthase epsilon chain, mitochondrial	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.1	93.2	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.8	92.1	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.6	84.5	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.6	84.5	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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