Co-expression analysis

Gene ID	Ptp.2232.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g11040: protein phosphatase 2C, putative / PP2C, putative (HF=5e+0)
Module size	6 genes
NF	0.43
%ile	72.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.94	Ptp.2232.1.S1_at	CK089340	-	-	5e+0	At4g11040	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.93	PtpAffx.48049.1.S1_at	DN489796	hypothetical protein	-	5e+0	At5g24410	glucosamine/galactosamine-6-phosphate isomerase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.94	Ptp.3760.1.S1_at	BU886519	hypothetical protein	-	2e+0	At5g37900	seven in absentia (SINA) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.94	PtpAffx.31469.1.A1_at	DN493005	hypothetical protein	-	2e-40	At1g66460	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.94	PtpAffx.13675.1.A1_at	CK096286	-	-	4e+0	At3g04090	SIP1A (SMALL AND BASIC INTRINSIC PROTEIN 1A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.94	Ptp.729.1.A1_at	CK088305	-	-	2e+0	At1g08930	ERD6 (EARLY RESPONSE TO DEHYDRATION 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	94.7	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.5	90.9	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.9	87.2	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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