Co-expression analysis

Gene ID	Ptp.2171.1.S1_a_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g12560: TRFL9 (TRF-LIKE 9) (HF=3e-32)
Module size	6 genes
NF	0.46
%ile	75.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	92.6	0.94	Ptp.2171.1.S1_a_at	CV227774	hypothetical protein	-	3e-32	At3g12560	TRFL9 (TRF-LIKE 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.94	Ptp.1557.2.S1_s_at	BI120353	-	-	1e-3	At4g17730	SYP23 (SYNTAXIN OF PLANTS 23)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.94	Ptp.4875.1.A1_a_at	CV283196	hypothetical protein	-	4e-4	At4g13020	MHK	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.94	Ptp.51.1.A1_at	CV257322	hypothetical protein	-	3e-9	At5g12310	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.94	PtpAffx.63326.1.A1_at	CV244522	hypothetical protein	-	5e-16	At2g35100	ARAD1 (ARABINAN DEFICIENT 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.94	PtpAffx.8063.1.S1_at	CK096400	hypothetical protein	-	4e-27	At5g53140	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.6	97.2	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
4.9	96.5	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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