CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ptp.1927.1.A1_at

Gene name
Homology with Arabidopsis Similar to At3g61190: BAP1 (BON ASSOCIATION PROTEIN 1) (HF=4e+0)

Module size 6 genes

NF 0.60

%ile 89.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 96.0 0.88 Ptp.1927.1.A1_at CK093004 - - 4e+0 At3g61190 BAP1 (BON ASSOCIATION PROTEIN 1) O.I. H.G. S.X.
0.60 86.0 0.89 PtpAffx.18211.1.A1_at CV257248 hypothetical protein - 9e-2 At4g11060 MTSSB (mitochondrially targeted single-stranded DNA binding protein) O.I. H.G. S.X.
0.60 86.0 0.90 PtpAffx.220781.1.S1_at pmrna37212 cytochrome P450 - 2e+0 At2g19850 - O.I. H.G. S.X.
0.50 78.6 0.88 Ptp.3407.1.S1_at CK114637 - - 3e+0 At2g21120 unknown protein O.I. H.G. S.X.
0.50 78.6 0.90 PtpAffx.101690.1.A1_at CV255238 - - 9e-1 At5g41401 unknown protein O.I. H.G. S.X.
0.31 53.7 0.91 PtpAffx.29085.1.A1_s_at DN489411 - - 4e+0 At1g75700 HVA22G (HVA22-LIKE PROTEIN G) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.80	96.0	0.88	Ptp.1927.1.A1_at	CK093004	-	-	4e+0	At3g61190	BAP1 (BON ASSOCIATION PROTEIN 1)	O.I.	H.G.	S.X.
0.60	86.0	0.89	PtpAffx.18211.1.A1_at	CV257248	hypothetical protein	-	9e-2	At4g11060	MTSSB (mitochondrially targeted single-stranded DNA binding protein)	O.I.	H.G.	S.X.
0.60	86.0	0.90	PtpAffx.220781.1.S1_at	pmrna37212	cytochrome P450	-	2e+0	At2g19850	-	O.I.	H.G.	S.X.
0.50	78.6	0.88	Ptp.3407.1.S1_at	CK114637	-	-	3e+0	At2g21120	unknown protein	O.I.	H.G.	S.X.
0.50	78.6	0.90	PtpAffx.101690.1.A1_at	CV255238	-	-	9e-1	At5g41401	unknown protein	O.I.	H.G.	S.X.
0.31	53.7	0.91	PtpAffx.29085.1.A1_s_at	DN489411	-	-	4e+0	At1g75700	HVA22G (HVA22-LIKE PROTEIN G)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.6 97.9 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.6 97.2 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.2 96.8 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
6.6	97.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.6	97.2	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.2	96.8	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

A co-expression module including the rice gene, Os09g0530900, orthologous to the query gene, Ptp.1927.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.97 99.9 Os09g0530900 At3g61190 - Oxydoreductase-like protein 1e+0 At1g55780 metal ion binding O.I. H.G. S.X.
0.41 52.4 Os02g0792900 At3g61190 - TMS membrane protein/tumour differentiallyexpressed protein family protein 1e-15 At1g16180 TMS membrane family protein / tumour differentially expressed (TDE) family protein O.I. H.G. S.X.
0.41 52.4 Os07g0512200 At3g61190 - Symbiosis-related like protein 2e-40 At4g21980 APG8A (AUTOPHAGY 8A) O.I. H.G. S.X.
0.38 46.9 Os06g0342200 At3g61190 - Eukaryotic translation initiation factor 1A(EIF-1A) (EIF-4C) 1e-7 At5g35680 eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative O.I. H.G. S.X.
0.36 44.0 Os03g0308000 At3g61190 - Ubiquitin-conjugating enzymes domain containingprotein 5e-11 At3g17000 UBC32 (ubiquitin-conjugating enzyme 32) O.I. H.G. S.X.
0.36 44.0 Os01g0930400 At3g61190 - K+ potassium transporter family protein 4e-7 At4g13420 HAK5 (HIGH AFFINITY K+ TRANSPORTER 5) O.I. H.G. S.X.
0.33 38.8 Os05g0182700 At3g61190 - Conserved hypothetical protein 5e-5 At1g27000 bZIP family transcription factor O.I. H.G. S.X.
0.33 38.8 Os02g0826400 At3g61190 - Conserved hypothetical protein 7e-2 At4g24026 unknown protein O.I. H.G. S.X.
0.32 36.3 Os01g0558600 At3g61190 - Ras-related protein RIC1 3e-30 At1g02130 ARA-5 (ARABIDOPSIS RAS 5) O.I. H.G. S.X.
0.31 34.5 Os01g0813400 At3g61190 - ADP-ribosylation factor 2e-96 At2g47170 ARF1A1C O.I. H.G. S.X.
0.30 32.7 Os02g0119400 At3g61190 - Syntaxin 52 (AtSYP52) 4e-11 At1g79590 SYP52 (SYNTAXIN OF PLANTS 52) O.I. H.G. S.X.
0.29 31.1 Os02g0184500 At3g61190 - - 7e-4 At5g32440 - O.I. H.G. S.X.
0.28 31.1 Os06g0681400 At3g61190 - Polyubiquitin 1e-160 At4g05320 UBQ10 (POLYUBIQUITIN 10) O.I. H.G. S.X.
0.26 25.6 Os07g0166800 At3g61190 - Rad6 (Ubiquitin carrier protein) 1e-29 At2g02760 ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) O.I. H.G. S.X.
0.25 24.1 Os09g0567400 At3g61190 - Histidine-containing phosphotransfer protein 3e-2 At3g47130 F-box family protein-related O.I. H.G. S.X.
0.25 24.1 Os04g0548000 At3g61190 - Eukaryotic protein of unknown function DUF862family protein 1e-2 At2g25190 unknown protein O.I. H.G. S.X.
0.25 24.1 Os02g0823300 At3g61190 - Zn-finger, RING domain containing protein 2e-12 At5g04460 protein binding / zinc ion binding O.I. H.G. S.X.
0.24 22.4 Os11g0425600 At3g61190 - Four F5 protein family protein 5e+0 At5g42040 RPN12b (Regulatory Particle Non-ATPase 12b) O.I. H.G. S.X.
0.24 22.4 Os02g0535700 At3g61190 - Protein of unknown function DUF1022 family protein 4e-7 At5g22350 ELM1 (ELONGATED MITOCHONDRIA 1) O.I. H.G. S.X.
0.23 21.2 Os01g0731000 At3g61190 - Conserved hypothetical protein 6e-12 At1g16960 unknown protein O.I. H.G. S.X.
0.20 16.5 Os06g0714000 At3g61190 - Protein of unknown function UPF0183 family protein 1e-6 At3g51130 unknown protein O.I. H.G. S.X.
0.19 15.1 Os03g0655200 At3g61190 - Vesicle transport v-SNARE family protein 7e-10 At5g50440 MEMB12 (MEMBRIN 12) O.I. H.G. S.X.
0.18 13.7 Os03g0784900 At3g61190 - Conserved hypothetical protein 1e-1 At2g34690 ACD11 (ACCELERATED CELL DEATH 11) O.I. H.G. S.X.
0.17 12.6 Os08g0440000 At3g61190 - Vesicle transport v-SNARE family protein 2e-3 At1g15880 GOS11 (golgi snare 11) O.I. H.G. S.X.
0.17 12.6 Os02g0520800 At3g61190 - Ubiquinol-cytochrome c reductase iron-sulfursubunit, mitochondrial precursor (EC 1.10.2.2) (Rieskeiron-sulfur protein) (RISP) 5e-14 At5g13430 ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative O.I. H.G. S.X.
0.16 11.3 Os05g0516600 At3g61190 - Small GTP binding protein 1e-32 At3g16100 ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C) O.I. H.G. S.X.
0.14 9.3 Os04g0390000 At3g61190 - 2-oxoglutarate dehydrogenase, E1 component 6e-49 At5g65750 2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putative O.I. H.G. S.X.
0.13 8.2 Os05g0292200 At3g61190 - Transcription factor IIA large subunit (TFIIA-L1) 3e+0 At4g14315 unknown protein O.I. H.G. S.X.
0.10 5.7 Os06g0507400 At3g61190 - BTB/POZ domain containing protein 3e-10 At3g61600 ATPOB1 O.I. H.G. S.X.
0.09 4.9 Os03g0756400 At3g61190 - Conserved hypothetical protein 2e-4 At5g27210 - O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.97	99.9	Os09g0530900	At3g61190	-	Oxydoreductase-like protein	1e+0	At1g55780	metal ion binding	O.I.	H.G.	S.X.
0.41	52.4	Os02g0792900	At3g61190	-	TMS membrane protein/tumour differentiallyexpressed protein family protein	1e-15	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	O.I.	H.G.	S.X.
0.41	52.4	Os07g0512200	At3g61190	-	Symbiosis-related like protein	2e-40	At4g21980	APG8A (AUTOPHAGY 8A)	O.I.	H.G.	S.X.
0.38	46.9	Os06g0342200	At3g61190	-	Eukaryotic translation initiation factor 1A(EIF-1A) (EIF-4C)	1e-7	At5g35680	eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative	O.I.	H.G.	S.X.
0.36	44.0	Os03g0308000	At3g61190	-	Ubiquitin-conjugating enzymes domain containingprotein	5e-11	At3g17000	UBC32 (ubiquitin-conjugating enzyme 32)	O.I.	H.G.	S.X.
0.36	44.0	Os01g0930400	At3g61190	-	K+ potassium transporter family protein	4e-7	At4g13420	HAK5 (HIGH AFFINITY K+ TRANSPORTER 5)	O.I.	H.G.	S.X.
0.33	38.8	Os05g0182700	At3g61190	-	Conserved hypothetical protein	5e-5	At1g27000	bZIP family transcription factor	O.I.	H.G.	S.X.
0.33	38.8	Os02g0826400	At3g61190	-	Conserved hypothetical protein	7e-2	At4g24026	unknown protein	O.I.	H.G.	S.X.
0.32	36.3	Os01g0558600	At3g61190	-	Ras-related protein RIC1	3e-30	At1g02130	ARA-5 (ARABIDOPSIS RAS 5)	O.I.	H.G.	S.X.
0.31	34.5	Os01g0813400	At3g61190	-	ADP-ribosylation factor	2e-96	At2g47170	ARF1A1C	O.I.	H.G.	S.X.
0.30	32.7	Os02g0119400	At3g61190	-	Syntaxin 52 (AtSYP52)	4e-11	At1g79590	SYP52 (SYNTAXIN OF PLANTS 52)	O.I.	H.G.	S.X.
0.29	31.1	Os02g0184500	At3g61190	-	-	7e-4	At5g32440	-	O.I.	H.G.	S.X.
0.28	31.1	Os06g0681400	At3g61190	-	Polyubiquitin	1e-160	At4g05320	UBQ10 (POLYUBIQUITIN 10)	O.I.	H.G.	S.X.
0.26	25.6	Os07g0166800	At3g61190	-	Rad6 (Ubiquitin carrier protein)	1e-29	At2g02760	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2)	O.I.	H.G.	S.X.
0.25	24.1	Os09g0567400	At3g61190	-	Histidine-containing phosphotransfer protein	3e-2	At3g47130	F-box family protein-related	O.I.	H.G.	S.X.
0.25	24.1	Os04g0548000	At3g61190	-	Eukaryotic protein of unknown function DUF862family protein	1e-2	At2g25190	unknown protein	O.I.	H.G.	S.X.
0.25	24.1	Os02g0823300	At3g61190	-	Zn-finger, RING domain containing protein	2e-12	At5g04460	protein binding / zinc ion binding	O.I.	H.G.	S.X.
0.24	22.4	Os11g0425600	At3g61190	-	Four F5 protein family protein	5e+0	At5g42040	RPN12b (Regulatory Particle Non-ATPase 12b)	O.I.	H.G.	S.X.
0.24	22.4	Os02g0535700	At3g61190	-	Protein of unknown function DUF1022 family protein	4e-7	At5g22350	ELM1 (ELONGATED MITOCHONDRIA 1)	O.I.	H.G.	S.X.
0.23	21.2	Os01g0731000	At3g61190	-	Conserved hypothetical protein	6e-12	At1g16960	unknown protein	O.I.	H.G.	S.X.
0.20	16.5	Os06g0714000	At3g61190	-	Protein of unknown function UPF0183 family protein	1e-6	At3g51130	unknown protein	O.I.	H.G.	S.X.
0.19	15.1	Os03g0655200	At3g61190	-	Vesicle transport v-SNARE family protein	7e-10	At5g50440	MEMB12 (MEMBRIN 12)	O.I.	H.G.	S.X.
0.18	13.7	Os03g0784900	At3g61190	-	Conserved hypothetical protein	1e-1	At2g34690	ACD11 (ACCELERATED CELL DEATH 11)	O.I.	H.G.	S.X.
0.17	12.6	Os08g0440000	At3g61190	-	Vesicle transport v-SNARE family protein	2e-3	At1g15880	GOS11 (golgi snare 11)	O.I.	H.G.	S.X.
0.17	12.6	Os02g0520800	At3g61190	-	Ubiquinol-cytochrome c reductase iron-sulfursubunit, mitochondrial precursor (EC 1.10.2.2) (Rieskeiron-sulfur protein) (RISP)	5e-14	At5g13430	ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative	O.I.	H.G.	S.X.
0.16	11.3	Os05g0516600	At3g61190	-	Small GTP binding protein	1e-32	At3g16100	ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C)	O.I.	H.G.	S.X.
0.14	9.3	Os04g0390000	At3g61190	-	2-oxoglutarate dehydrogenase, E1 component	6e-49	At5g65750	2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putative	O.I.	H.G.	S.X.
0.13	8.2	Os05g0292200	At3g61190	-	Transcription factor IIA large subunit (TFIIA-L1)	3e+0	At4g14315	unknown protein	O.I.	H.G.	S.X.
0.10	5.7	Os06g0507400	At3g61190	-	BTB/POZ domain containing protein	3e-10	At3g61600	ATPOB1	O.I.	H.G.	S.X.
0.09	4.9	Os03g0756400	At3g61190	-	Conserved hypothetical protein	2e-4	At5g27210	-	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	Ptp.1927.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g61190: BAP1 (BON ASSOCIATION PROTEIN 1) (HF=4e+0)
Module size	6 genes
NF	0.60
%ile	89.7

Co-expression analysis

Gene ID Ptp.1927.1.A1_at Gene name Homology with ArabidopsisSimilar to At3g61190: BAP1 (BON ASSOCIATION PROTEIN 1) (HF=4e+0) Module size 6 genes NF 0.60 %ile 89.7

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareTriticum_aestivumVitis_viniferaZea_mays

Gene ID Ptp.1927.1.A1_at

Gene name
Homology with Arabidopsis Similar to At3g61190: BAP1 (BON ASSOCIATION PROTEIN 1) (HF=4e+0)

Module size 6 genes

NF 0.60

%ile 89.7

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays