Co-expression analysis

Gene ID	Ptp.1927.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g61190: BAP1 (BON ASSOCIATION PROTEIN 1) (HF=4e+0)
Module size	6 genes
NF	0.60
%ile	89.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	96.0	0.88	Ptp.1927.1.A1_at	CK093004	-	-	4e+0	At3g61190	BAP1 (BON ASSOCIATION PROTEIN 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.89	PtpAffx.18211.1.A1_at	CV257248	hypothetical protein	-	9e-2	At4g11060	MTSSB (mitochondrially targeted single-stranded DNA binding protein)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.90	PtpAffx.220781.1.S1_at	pmrna37212	cytochrome P450	-	2e+0	At2g19850	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.88	Ptp.3407.1.S1_at	CK114637	-	-	3e+0	At2g21120	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.90	PtpAffx.101690.1.A1_at	CV255238	-	-	9e-1	At5g41401	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.91	PtpAffx.29085.1.A1_s_at	DN489411	-	-	4e+0	At1g75700	HVA22G (HVA22-LIKE PROTEIN G)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.6	97.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.6	97.2	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.2	96.8	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.68032.1.S1_at, orthologous to the query gene, Ptp.1927.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.90	93.7	GmaAffx.68032.1.S1_at	At3g61190	-	-	7e-1	At2g43930	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.55	76.3	GmaAffx.67765.1.S1_at	At3g61190	-	-	1e+0	At1g51000	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	GmaAffx.58155.1.S1_at	At3g61190	-	-	2e-36	At4g32150	ATVAMP711 (ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 711)	O.I.	H.G.	S.X.	Please select
0.31	42.2	GmaAffx.74999.1.S1_at	At3g61190	-	-	5e-74	At2g42500	PP2A-4	O.I.	H.G.	S.X.	Please select
0.29	39.0	GmaAffx.38743.1.S1_at	At3g61190	-	-	4e-4	At5g23340	-	O.I.	H.G.	S.X.	Please select
0.25	32.6	Gma.12593.3.S1_at	At3g61190	-	-	5e-34	At2g32170	-	O.I.	H.G.	S.X.	Please select
0.20	25.1	Gma.11201.3.S1_a_at	At3g61190	-	-	5e-12	At4g36760	ATAPP1	O.I.	H.G.	S.X.	Please select
0.18	22.3	GmaAffx.56889.1.S1_s_at	At3g61190	-	-	3e-7	At3g59380	FTA (FARNESYLTRANSFERASE A)	O.I.	H.G.	S.X.	Please select
0.17	21.2	GmaAffx.92886.1.S1_s_at	At3g61190	-	-	3e-41	At5g09900	EMB2107 (EMBRYO DEFECTIVE 2107)	O.I.	H.G.	S.X.	Please select
0.16	19.7	Gma.8087.2.S1_a_at	At3g61190	-	-	1e+0	At1g26690	emp24/gp25L/p24 family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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