CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ptp.1913.1.A1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At4g02450: glycine-rich protein (HF=5e-1)

Module size 6 genes

NF 0.46

%ile 75.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 94.9 0.96 Ptp.1913.1.A1_at CV263831 hypothetical protein - 5e-1 At4g02450 glycine-rich protein O.I. H.G. S.X.
0.50 78.6 0.96 PtpAffx.202881.1.S1_s_at pmrna5689 hypothetical protein - 1e-21 At1g72470 ATEXO70D1 (exocyst subunit EXO70 family protein D1) O.I. H.G. S.X.
0.46 73.7 0.96 Ptp.1382.1.A1_at CV258748 acyl:coa ligase - 5e-19 At1g20510 OPCL1 (OPC-8:0 COA LIGASE1) O.I. H.G. S.X.
0.44 71.9 0.96 Ptp.3030.1.S1_s_at DN484799 hypothetical protein - 6e-15 At1g79440 ALDH5F1 O.I. H.G. S.X.
0.30 52.0 0.96 PtpAffx.27171.1.A1_at CV229989 hypothetical protein - 5e-5 At2g31510 IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7) O.I. H.G. S.X.
0.23 40.5 0.97 PtpAffx.42410.1.S1_s_at BP922740 hypothetical protein - 1e-20 At1g64140 - O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.77	94.9	0.96	Ptp.1913.1.A1_at	CV263831	hypothetical protein	-	5e-1	At4g02450	glycine-rich protein	O.I.	H.G.	S.X.
0.50	78.6	0.96	PtpAffx.202881.1.S1_s_at	pmrna5689	hypothetical protein	-	1e-21	At1g72470	ATEXO70D1 (exocyst subunit EXO70 family protein D1)	O.I.	H.G.	S.X.
0.46	73.7	0.96	Ptp.1382.1.A1_at	CV258748	acyl:coa ligase	-	5e-19	At1g20510	OPCL1 (OPC-8:0 COA LIGASE1)	O.I.	H.G.	S.X.
0.44	71.9	0.96	Ptp.3030.1.S1_s_at	DN484799	hypothetical protein	-	6e-15	At1g79440	ALDH5F1	O.I.	H.G.	S.X.
0.30	52.0	0.96	PtpAffx.27171.1.A1_at	CV229989	hypothetical protein	-	5e-5	At2g31510	IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7)	O.I.	H.G.	S.X.
0.23	40.5	0.97	PtpAffx.42410.1.S1_s_at	BP922740	hypothetical protein	-	1e-20	At1g64140	-	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.61	87.0	0.93	PtpAffx.212016.1.S1_at	pmrna23596	SET domain protein	-	2e-11	At1g04050	SUVR1 (ARABIDOPSIS HOMOLOG OF SU(VAR)3-9 1)	O.I.	H.G.	S.X.
0.50	78.6	0.93	PtpAffx.222741.1.S1_at	pmrna40361	hypothetical protein	-	2e+0	At5g64250	2-nitropropane dioxygenase family / NPD family	O.I.	H.G.	S.X.
0.46	73.7	0.95	PtpAffx.140167.1.A1_at	CV270265	hypothetical protein	-	3e-9	At1g13750	calcineurin-like phosphoesterase family protein	O.I.	H.G.	S.X.
0.43	69.7	0.95	PtpAffx.214551.1.S1_s_at	pmrna28270	hypothetical protein	-	2e-10	At2g11520	CRCK3	O.I.	H.G.	S.X.
0.40	67.0	0.92	PtpAffx.5203.1.A1_at	CV257433	hypothetical protein	-	1e+0	At1g63140	O-methyltransferase, putative	O.I.	H.G.	S.X.
0.40	67.0	0.94	Ptp.6069.2.S1_a_at	CV273345	GH3 family protein	-	6e-8	At2g46370	JAR1 (JASMONATE RESISTANT 1)	O.I.	H.G.	S.X.
0.36	61.6	0.94	PtpAffx.35608.1.S1_at	CV229376	hypothetical protein	-	3e-8	At5g24260	prolyl oligopeptidase family protein	O.I.	H.G.	S.X.
0.36	61.6	0.95	PtpAffx.52716.1.A1_s_at	CK096645	hypothetical protein	-	6e-28	At5g17380	pyruvate decarboxylase family protein	O.I.	H.G.	S.X.
0.36	61.6	0.96	Ptp.3739.1.S1_s_at	CK097141	hypothetical protein	-	4e-20	At4g21580	oxidoreductase, zinc-binding dehydrogenase family protein	O.I.	H.G.	S.X.
0.35	59.7	0.93	Ptp.2783.1.A1_at	CV262385	hypothetical protein	-	2e+0	At2g16340	unknown protein	O.I.	H.G.	S.X.
0.33	57.5	0.93	PtpAffx.145974.1.A1_at	BP930106	-	-	4e-1	At3g49870	ATARLA1C (ADP-ribosylation factor-like A1C)	O.I.	H.G.	S.X.
0.33	57.5	0.93	Ptp.6069.1.S1_at	CK093943	GH3 family protein	-	2e-7	At2g46370	JAR1 (JASMONATE RESISTANT 1)	O.I.	H.G.	S.X.
0.33	57.5	0.94	PtpAffx.211667.1.S1_at	pmrna22871	hypothetical protein	-	1e-31	At2g46920	POL (poltergeist)	O.I.	H.G.	S.X.
0.32	55.2	0.95	PtpAffx.50700.1.S1_s_at	CV261248	hypothetical protein	-	1e-2	At2g41900	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.
0.31	53.7	0.96	PtpAffx.209368.1.S1_at	pmrna18550	hypothetical protein	-	2e+0	At5g13590	unknown protein	O.I.	H.G.	S.X.
0.31	53.7	0.96	PtpAffx.224303.1.S1_at	pmrna42728	hypothetical protein	-	1e-9	At4g15560	CLA1 (CLOROPLASTOS ALTERADOS 1)	O.I.	H.G.	S.X.
0.30	52.0	0.91	PtpAffx.207286.1.S1_at	pmrna14457	cc-nbs-lrr resistance protein	-	8e-2	At5g66900	disease resistance protein (CC-NBS-LRR class), putative	O.I.	H.G.	S.X.
0.29	50.5	0.94	Ptp.2127.1.S1_at	BU874937	hypothetical protein	-	7e-15	At2g16600	ROC3	O.I.	H.G.	S.X.
0.29	50.5	0.94	PtpAffx.10363.1.S1_at	CV264628	hypothetical protein	-	3e+0	At2g45630	oxidoreductase family protein	O.I.	H.G.	S.X.
0.29	50.5	0.94	Ptp.6132.1.A1_at	CV282442	hypothetical protein	-	3e-11	At3g27320	hydrolase	O.I.	H.G.	S.X.
0.28	50.5	0.92	PtpAffx.201110.1.S1_at	pmrna2185	hypothetical protein	-	9e-8	At2g32800	AP4.3A	O.I.	H.G.	S.X.
0.25	43.6	0.96	PtpAffx.58653.1.A1_s_at	CK096218	GRAS family transcription factor	-	1e-3	At2g29060	scarecrow transcription factor family protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.3 93.7 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
3.3	93.7	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Ptp.1913.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g02450: glycine-rich protein (HF=5e-1)
Module size	6 genes
NF	0.46
%ile	75.6

Co-expression analysis

Gene ID Ptp.1913.1.A1_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At4g02450: glycine-rich protein (HF=5e-1) Module size 6 genes NF 0.46 %ile 75.6

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Ptp.1913.1.A1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At4g02450: glycine-rich protein (HF=5e-1)

Module size 6 genes

NF 0.46

%ile 75.6

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays