Co-expression analysis

Gene ID	Ptp.1913.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g02450: glycine-rich protein (HF=5e-1)
Module size	6 genes
NF	0.46
%ile	75.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	94.9	0.96	Ptp.1913.1.A1_at	CV263831	hypothetical protein	-	5e-1	At4g02450	glycine-rich protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	PtpAffx.202881.1.S1_s_at	pmrna5689	hypothetical protein	-	1e-21	At1g72470	ATEXO70D1 (exocyst subunit EXO70 family protein D1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.96	Ptp.1382.1.A1_at	CV258748	acyl:coa ligase	-	5e-19	At1g20510	OPCL1 (OPC-8:0 COA LIGASE1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.96	Ptp.3030.1.S1_s_at	DN484799	hypothetical protein	-	6e-15	At1g79440	ALDH5F1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.96	PtpAffx.27171.1.A1_at	CV229989	hypothetical protein	-	5e-5	At2g31510	IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.97	PtpAffx.42410.1.S1_s_at	BP922740	hypothetical protein	-	1e-20	At1g64140	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	93.7	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the maize gene, Zm.5751.1.A1_at, orthologous to the query gene, Ptp.1913.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	Zm.5751.1.A1_at	At4g02450	peroxidase	-	2e+1	At5g50760	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	Zm.4654.1.A1_a_at	At4g02450	hypothetical protein LOC100272406	-	2e-4	At1g72210	basic helix-loop-helix (bHLH) family protein (bHLH096)	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.16449.1.A1_at	At4g02450	-	-	1e+0	At3g29034	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	Zm.5479.1.A1_at	At4g02450	-	-	3e-1	At1g71230	CSN5B (COP9-SIGNALOSOME 5B)	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.6498.1.A1_at	At4g02450	-	-	3e-4	At1g10050	glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	Zm.3821.1.A1_at	At4g02450	-	-	1e+0	At4g27950	CRF4 (CYTOKININ RESPONSE FACTOR 4)	O.I.	H.G.	S.X.	Please select
0.25	21.3	Zm.6721.6.A1_at	At4g02450	Histone H4	-	5e-28	At5g59690	histone H4	O.I.	H.G.	S.X.	Please select
0.23	18.6	Zm.1077.1.S1_at	At4g02450	NADH-ubiquinone oxidoreductase B16.6 subunit	-	5e-10	At1g04630	MEE4 (maternal effect embryo arrest 4)	O.I.	H.G.	S.X.	Please select
0.19	12.8	Zm.16931.1.A1_s_at	At4g02450	hypothetical protein LOC100279421	-	3e-1	At5g46610	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	5.9	Zm.2489.1.A1_at	At4g02450	mitochondrial chaperonin-60	-	8e-82	At3g23990	HSP60 (HEAT SHOCK PROTEIN 60)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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