Co-expression analysis

Gene ID	Ptp.1913.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g02450: glycine-rich protein (HF=5e-1)
Module size	6 genes
NF	0.46
%ile	75.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	94.9	0.96	Ptp.1913.1.A1_at	CV263831	hypothetical protein	-	5e-1	At4g02450	glycine-rich protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	PtpAffx.202881.1.S1_s_at	pmrna5689	hypothetical protein	-	1e-21	At1g72470	ATEXO70D1 (exocyst subunit EXO70 family protein D1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.96	Ptp.1382.1.A1_at	CV258748	acyl:coa ligase	-	5e-19	At1g20510	OPCL1 (OPC-8:0 COA LIGASE1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.96	Ptp.3030.1.S1_s_at	DN484799	hypothetical protein	-	6e-15	At1g79440	ALDH5F1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.96	PtpAffx.27171.1.A1_at	CV229989	hypothetical protein	-	5e-5	At2g31510	IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.97	PtpAffx.42410.1.S1_s_at	BP922740	hypothetical protein	-	1e-20	At1g64140	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	93.7	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the grape gene, 1620116_at, orthologous to the query gene, Ptp.1913.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	99.2	1620116_at	At4g02450	hypothetical protein LOC100262620	-	3e-4	At5g47140	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.59	80.6	1611132_at	At4g02450	hypothetical protein LOC100251243	-	4e-29	At1g79000	HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1)	O.I.	H.G.	S.X.	Please select
0.51	73.2	1606481_at	At4g02450	hypothetical protein LOC100265434	-	2e-1	At5g30500	galactinol synthase, putative	O.I.	H.G.	S.X.	Please select
0.50	72.7	1613762_at	At4g02450	hypothetical protein LOC100256306	-	5e-3	At2g04880	ZAP1 (ZINC-DEPENDENT ACTIVATOR PROTEIN-1)	O.I.	H.G.	S.X.	Please select
0.46	66.5	1606430_at	At4g02450	hypothetical protein LOC100251243	-	1e-33	At1g79000	HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1)	O.I.	H.G.	S.X.	Please select
0.45	64.6	1615632_a_at	At4g02450	hypothetical protein LOC100262698	-	3e-13	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	O.I.	H.G.	S.X.	Please select
0.43	61.5	1614710_at	At4g02450	-	-	1e-1	At1g53625	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	60.1	1615901_at	At4g02450	hypothetical protein LOC100248277	-	5e+0	At4g13075	RALFL30 (RALF-LIKE 30)	O.I.	H.G.	S.X.	Please select
0.40	57.7	1617244_s_at	At4g02450	hypothetical protein LOC100262315	-	1e-23	At4g22150	PUX3	O.I.	H.G.	S.X.	Please select
0.38	53.6	1609716_at	At4g02450	hypothetical protein LOC100265922	-	3e-1	At2g21210	auxin-responsive protein, putative	O.I.	H.G.	S.X.	Please select
0.38	53.6	1615432_at	At4g02450	hypothetical protein LOC100258784	-	3e-9	At3g47850	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	1609424_at	At4g02450	hypothetical protein LOC100263956	-	7e-30	At3g13670	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.35	48.5	1620693_at	At4g02450	-	-	1e-12	At2g22730	transporter-related	O.I.	H.G.	S.X.	Please select
0.34	46.8	1618348_at	At4g02450	hypothetical protein LOC100265921	-	1e-47	At5g45750	AtRABA1c (Arabidopsis Rab GTPase homolog A1c)	O.I.	H.G.	S.X.	Please select
0.34	46.8	1620463_at	At4g02450	hypothetical protein LOC100265246	-	1e+0	At2g27970	CKS2 (CDK-subunit 2)	O.I.	H.G.	S.X.	Please select
0.34	46.8	1620191_at	At4g02450	hypothetical protein LOC100245656	-	1e+0	At3g08636	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	1609086_s_at	At4g02450	similar to F2D10.18	-	6e-16	At1g20696	HMGB3 (HIGH MOBILITY GROUP B 3)	O.I.	H.G.	S.X.	Please select
0.33	45.7	1610112_at	At4g02450	hypothetical protein LOC100251867	-	4e-67	At1g70160	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	1612922_at	At4g02450	similar to FHY3 (FAR-RED ELONGATED HYPOCOTYLS 3); transcription factor	-	1e+0	At1g02510	TPK4	O.I.	H.G.	S.X.	Please select
0.31	41.3	1620419_at	At4g02450	hypothetical protein LOC100241492	-	5e-1	At2g46330	AGP16 (ARABINOGALACTAN PROTEIN 16)	O.I.	H.G.	S.X.	Please select
0.30	39.4	1611345_at	At4g02450	similar to Os08g0326100	-	2e-2	At5g47790	forkhead-associated domain-containing protein / FHA domain-containing protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	1617655_at	At4g02450	hypothetical protein LOC100262391	-	5e-10	At3g16620	ATTOC120	O.I.	H.G.	S.X.	Please select
0.29	37.7	1616340_at	At4g02450	hypothetical protein LOC100259651	-	6e-9	At5g48160	OBE2 (OBERON2)	O.I.	H.G.	S.X.	Please select
0.28	37.7	1611870_at	At4g02450	hypothetical protein LOC100247177	-	8e-152	At5g09740	HAM2 (histone acetyltransferase of the MYST family 2)	O.I.	H.G.	S.X.	Please select
0.27	34.0	1607202_s_at	At4g02450	hypothetical protein LOC100242295	-	2e-65	At5g23090	NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13)	O.I.	H.G.	S.X.	Please select
0.27	34.0	1613129_at	At4g02450	hypothetical protein LOC100266068	-	2e-13	At4g17330	ATG2484-1	O.I.	H.G.	S.X.	Please select
0.24	28.7	1616823_at	At4g02450	hypothetical protein LOC100257426	-	6e-7	At3g21175	ZML1 (ZIM-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.23	27.5	1607924_at	At4g02450	hypothetical protein LOC100261557	-	3e-11	At4g16580	catalytic	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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