CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ptp.1913.1.A1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At4g02450: glycine-rich protein (HF=5e-1)

Module size 6 genes

NF 0.46

%ile 75.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 94.9 0.96 Ptp.1913.1.A1_at CV263831 hypothetical protein - 5e-1 At4g02450 glycine-rich protein O.I. H.G. S.X.
0.50 78.6 0.96 PtpAffx.202881.1.S1_s_at pmrna5689 hypothetical protein - 1e-21 At1g72470 ATEXO70D1 (exocyst subunit EXO70 family protein D1) O.I. H.G. S.X.
0.46 73.7 0.96 Ptp.1382.1.A1_at CV258748 acyl:coa ligase - 5e-19 At1g20510 OPCL1 (OPC-8:0 COA LIGASE1) O.I. H.G. S.X.
0.44 71.9 0.96 Ptp.3030.1.S1_s_at DN484799 hypothetical protein - 6e-15 At1g79440 ALDH5F1 O.I. H.G. S.X.
0.30 52.0 0.96 PtpAffx.27171.1.A1_at CV229989 hypothetical protein - 5e-5 At2g31510 IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7) O.I. H.G. S.X.
0.23 40.5 0.97 PtpAffx.42410.1.S1_s_at BP922740 hypothetical protein - 1e-20 At1g64140 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.3 93.7 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g02450, orthologous to the query gene, Ptp.1913.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.13 5.8 At4g02450 828006 glycine-rich protein F:molecular_function unknown;P:unknown;C:plasma membrane;BMOPFVA O.I. H.G. S.X.
0.40 50.8 At1g07660 837279 histone H4 F:DNA binding;P:nucleosome assembly;C:plasma membrane, chloroplast;MOPFV O.I. H.G. S.X.
0.40 50.8 At2g28740 817423 HIS4 histone 4 O.I. H.G. S.X.
0.11 4.1 At1g08780 837400 AIP3 (ABI3-INTERACTING PROTEIN 3) F:unfolded protein binding;P:protein folding;C:prefoldin complex;MFOPA O.I. H.G. S.X.
0.07 1.9 At4g17520 827467 nuclear RNA-binding protein, putative F:RNA binding;P:biological_process unknown;C:nucleus, peroxisome;MBOPFVA O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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