Co-expression analysis

Gene ID	Ptp.1858.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g27770: ACA1 (AUTO-INHIBITED CA2+-ATPASE 1) (HF=8e-71)
Module size	7 genes
NF	0.44
%ile	74.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	84.2	0.97	Ptp.1858.1.S1_at	BU812732	hypothetical protein	-	8e-71	At1g27770	ACA1 (AUTO-INHIBITED CA2+-ATPASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.97	PtpAffx.25004.5.A1_a_at	CV239237	hypothetical protein	-	7e-24	At3g11200	AL2 (ALFIN-LIKE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.97	PtpAffx.210864.1.S1_s_at	pmrna21339	hypothetical protein	-	1e-64	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.97	PtpAffx.210864.1.S1_x_at	pmrna21339	hypothetical protein	-	1e-64	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	0.97	Ptp.6294.1.S1_a_at	CF118987	hypothetical protein	-	1e-41	At5g48160	OBE2 (OBERON2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.97	Ptp.6439.1.S1_s_at	BU874074	hypothetical protein	-	4e-54	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.97	Ptp.7554.2.S1_s_at	BU832334	hypothetical protein	-	2e-166	At1g08420	kelch repeat-containing protein / serine/threonine phosphoesterase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.7	91.8	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.7	85.5	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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