Co-expression analysis

Gene ID Ptp.1777.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g67930: Golgi transport complex protein-related (HF=4e-11)
Module size 9 genes
NF 0.43
%ile 72.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5078.60.95Ptp.1777.1.S1_atCK092218hypothetical protein-4e-11At1g67930Golgi transport complex protein-relatedO.I.H.G.S.X.
0.5582.20.96Ptp.6486.1.S1_s_atCV249938actin 1-0At1g49240ACT8 (ACTIN 8)O.I.H.G.S.X.
0.5380.50.95PtpAffx.213732.1.S1_atpmrna26800hypothetical protein-1e-27At1g61670-O.I.H.G.S.X.
0.4471.90.95PtpAffx.206011.1.S1_s_atpmrna11915hypothetical protein-3e-114At5g10270CDKCO.I.H.G.S.X.
0.4268.60.96PtpAffx.1258.1.S1_s_atCV242350actin 1-5e-138At5g09810ACT7 (ACTIN 7)O.I.H.G.S.X.
0.4067.00.97Ptp.2818.1.S1_atCV277668hypothetical protein-2e+0At5g19030RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.3153.70.96PtpAffx.200412.1.S1_x_atpmrna830hypothetical protein-0At4g11380beta-adaptin, putativeO.I.H.G.S.X.
0.2543.60.96PtpAffx.5770.1.S1_s_atCV280704hypothetical protein-3e-45At3g47810MAG1 (MAIGO 1)O.I.H.G.S.X.
0.2543.60.96Ptp.1497.2.S1_x_atCV243508s-adenosylmethionine synthetase 5-3e-179At1g02500SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.697.9GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.396.9GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.196.8GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.896.4GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.785.5GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.583.5GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.583.5GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.583.5GSM244435Mlp infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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