Co-expression analysis

Gene ID	Ptp.1773.1.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g20840: secretory carrier membrane protein (SCAMP) family protein (HF=7e-78)
Module size	6 genes
NF	0.12
%ile	23.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	78.6	0.89	Ptp.1773.1.A1_at	CV270316	hypothetical protein	-	7e-78	At2g20840	secretory carrier membrane protein (SCAMP) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.89	PtpAffx.81348.1.S1_s_at	CX175428	hypothetical protein	-	1e-38	At5g15740	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.90	PtpAffx.212189.1.S1_s_at	pmrna23892	hypothetical protein	-	2e-5	At5g07070	CIPK2 (CBL-INTERACTING PROTEIN KINASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.89	PtpAffx.66991.1.A1_s_at	CV247472	hypothetical protein	-	5e+0	At2g17160	protein kinase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.88	PtpAffx.207762.1.S1_at	pmrna15443	2-oxoglutarate-dependent dioxygenase	-	2e+0	At4g24370	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.89	Ptp.763.1.S1_s_at	CK088840	hypothetical protein	-	3e-5	At5g15350	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.9	92.5	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM372100	Clone3200_LPI5_N+_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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