Co-expression analysis

Gene ID	Ptp.1743.1.A1_a_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g26300: emb1027 (embryo defective 1027) (HF=3e-45)
Module size	7 genes
NF	0.41
%ile	69.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	94.1	0.97	Ptp.1743.1.A1_a_at	CV271562	hypothetical protein	-	3e-45	At4g26300	emb1027 (embryo defective 1027)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.97	PtpAffx.5999.1.S1_s_at	BU894039	hypothetical protein	-	3e-14	At5g42720	glycosyl hydrolase family 17 protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.97	Ptp.6732.1.S1_at	CK111922	histone 2	-	2e-27	At3g54560	HTA11	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.97	PtpAffx.2543.1.S1_at	DN490912	hypothetical protein	-	8e-10	At1g04190	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.97	PtpAffx.19408.1.S1_a_at	CV255062	hypothetical protein	-	3e-70	At3g26340	20S proteasome beta subunit E, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.97	Ptp.8141.1.S1_at	CV250890	hypothetical protein	-	2e-83	At5g08290	YLS8	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.97	Ptp.5276.1.S1_s_at	CV268936	hypothetical protein	-	1e-25	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.3	96.9	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.1	95.5	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.2	93.5	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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