Co-expression analysis

Gene ID	Ptp.1501.1.A1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g18190: AAA-type ATPase family protein (HF=4e-23)
Module size	6 genes
NF	0.17
%ile	32.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	92.6	0.92	Ptp.1501.1.A1_s_at	CK093594	hypothetical protein	-	4e-23	At2g18190	AAA-type ATPase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.94	PtpAffx.18098.2.S1_at	CV263810	hypothetical protein	-	3e-5	At3g10985	SAG20 (SENESCENCE ASSOCIATED GENE 20)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.92	PtpAffx.202729.1.S1_at	pmrna5456	hypothetical protein	-	1e+0	At3g51730	saposin B domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.92	Ptp.3331.1.A1_at	CV261113	hypothetical protein	-	3e-1	At5g41080	glycerophosphoryl diester phosphodiesterase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.92	PtpAffx.82253.1.A1_at	CV232973	hypothetical protein	-	2e-20	At3g52990	pyruvate kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.92	PtpAffx.151954.1.S1_a_at	CV259016	hypothetical protein	-	6e-26	At3g58180	PBS lyase HEAT-like repeat-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.4	98.8	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.8	97.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.2	95.6	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.8	86.4	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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