Co-expression analysis

Gene ID Ptp.1501.1.A1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g18190: AAA-type ATPase family protein (HF=4e-23)
Module size 6 genes
NF 0.17
%ile 32.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7192.60.92Ptp.1501.1.A1_s_atCK093594hypothetical protein-4e-23At2g18190AAA-type ATPase family proteinO.I.H.G.S.X.
0.3357.50.94PtpAffx.18098.2.S1_atCV263810hypothetical protein-3e-5At3g10985SAG20 (SENESCENCE ASSOCIATED GENE 20)O.I.H.G.S.X.
0.3255.20.92PtpAffx.202729.1.S1_atpmrna5456hypothetical protein-1e+0At3g51730saposin B domain-containing proteinO.I.H.G.S.X.
0.2340.50.92Ptp.3331.1.A1_atCV261113hypothetical protein-3e-1At5g41080glycerophosphoryl diester phosphodiesterase family proteinO.I.H.G.S.X.
0.2136.50.92PtpAffx.82253.1.A1_atCV232973hypothetical protein-2e-20At3g52990pyruvate kinase, putativeO.I.H.G.S.X.
0.0711.60.92PtpAffx.151954.1.S1_a_atCV259016hypothetical protein-6e-26At3g58180PBS lyase HEAT-like repeat-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.498.8GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
5.897.4GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.395.8GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.295.6GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.794.7GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.794.7GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.092.9GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.992.5GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
1.886.4GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage