Co-expression analysis

Gene ID Ptp.1426.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g07190: ATS3 (ARABIDOPSIS THALIANA SEED GENE 3) (HF=1e+1)
Module size 6 genes
NF 0.38
%ile 64.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.92Ptp.1426.1.S1_atCK109003--1e+1At5g07190ATS3 (ARABIDOPSIS THALIANA SEED GENE 3)O.I.H.G.S.X.
0.4774.60.90PtpAffx.18260.1.A1_atCV266306--7e+0At3g02870VTC4O.I.H.G.S.X.
0.4067.00.90Ptp.7310.1.S1_atDN492822--5e-2At1g01305unknown proteinO.I.H.G.S.X.
0.3357.50.91PtpAffx.37623.1.A1_atDN497954--1e-4Atmg00660-O.I.H.G.S.X.
0.2950.50.91PtpAffx.202765.1.S1_atpmrna5510hypothetical protein-1e-128Atmg00520-O.I.H.G.S.X.
0.1932.70.89PtpAffx.12675.8.S1_atCK107191--5e+0At5g49490AGL83 (AGAMOUS-LIKE 83)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.996.5GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
4.095.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.892.1GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.892.1GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM362890Clone1979_LPI5_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.389.8GSM327402Populus balsamifera_20071015_Etiolated_seedling_6d_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.088.0GSM362883Clone1979_LPI2_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.987.2GSM372093Clone3200_LPI5_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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