Co-expression analysis

Gene ID	Ptp.1382.1.A1_at
Gene name	acyl:coa ligase
Homology with Arabidopsis	Similar to At1g20510: OPCL1 (OPC-8:0 COA LIGASE1) (HF=5e-19)
Module size	6 genes
NF	0.34
%ile	59.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	80.5	0.96	Ptp.1382.1.A1_at	CV258748	acyl:coa ligase	-	5e-19	At1g20510	OPCL1 (OPC-8:0 COA LIGASE1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.97	Ptp.1913.1.A1_at	CV263831	hypothetical protein	-	5e-1	At4g02450	glycine-rich protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.97	PtpAffx.42410.1.S1_s_at	BP922740	hypothetical protein	-	1e-20	At1g64140	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.95	PtpAffx.52716.1.A1_s_at	CK096645	hypothetical protein	-	6e-28	At5g17380	pyruvate decarboxylase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.95	PtpAffx.27171.1.A1_at	CV229989	hypothetical protein	-	5e-5	At2g31510	IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.96	PtpAffx.42410.1.S1_at	BP922740	hypothetical protein	-	1e-20	At1g64140	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	94.5	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.9	92.5	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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