Co-expression analysis

Gene ID Ptp.1302.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g01720: ribophorin I family protein (HF=9e-13)
Module size 14 genes
NF 0.28
%ile 49.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6388.10.94Ptp.1302.1.S1_atCK092616hypothetical protein-9e-13At2g01720ribophorin I family proteinO.I.H.G.S.X.
0.4167.70.95PtpAffx.30949.2.A1_a_atCV255147--1e+1At5g47120ATBI1 (BAX INHIBITOR 1)O.I.H.G.S.X.
0.3661.60.96PtpAffx.80529.1.A1_s_atBP936518hypothetical protein-1e-3At5g18190protein kinase family proteinO.I.H.G.S.X.
0.3052.00.96Ptp.7209.1.S1_s_atCV261003hypothetical protein-2e-16At1g65650UCH2O.I.H.G.S.X.
0.2950.50.95PtpAffx.27479.1.S1_atCV244955hypothetical protein-7e-16At1g26110unknown proteinO.I.H.G.S.X.
0.2850.50.95PtpAffx.18064.1.S1_atCV262645hypothetical protein-2e-19At4g18060clathrin bindingO.I.H.G.S.X.
0.2850.50.96Ptp.7863.1.S1_atCV267692--1e+0At1g64220TOM7-2 (TRANSLOCASE OF OUTER MEMBRANE 7 KDA SUBUNIT 2)O.I.H.G.S.X.
0.2850.50.95Ptp.4553.1.S1_s_atCV254113hypothetical protein-1e-17At2g25280-O.I.H.G.S.X.
0.2747.10.96Ptp.4721.1.S1_atCV265311hypothetical protein-7e-72At5g66680DGL1O.I.H.G.S.X.
0.2645.20.95PtpAffx.103104.2.A1_s_atCX654327hypothetical protein-3e-8At4g27780ACBP2 (ACYL-COA BINDING PROTEIN ACBP 2)O.I.H.G.S.X.
0.2238.30.96Ptp.754.1.S1_atCA927725hypothetical protein-2e-56At1g26550peptidyl-prolyl cis-trans isomerase PPIC-type family proteinO.I.H.G.S.X.
0.2034.60.95PtpAffx.7994.1.S1_atCV263629hypothetical protein-4e-2At2g45530zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.1525.30.96Ptp.569.1.S1_s_atBU823373hypothetical protein-3e-79At1g52600signal peptidase, putativeO.I.H.G.S.X.
0.1321.60.95Ptp.1672.1.A1_a_atCV225324hypothetical protein-4e-23At4g33410signal peptide peptidase family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.295.6GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.095.3GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.794.7GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM362883Clone1979_LPI2_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.684.5GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.684.5GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage