Co-expression analysis

Gene ID	Ptp.1287.2.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g45130: RHA1 (RAB HOMOLOG 1) (HF=2e-73)
Module size	7 genes
NF	0.51
%ile	81.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	97.4	0.97	Ptp.1287.2.S1_s_at	CX178052	hypothetical protein	-	2e-73	At5g45130	RHA1 (RAB HOMOLOG 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.97	PtpAffx.211143.1.S1_s_at	pmrna21896	hypothetical protein	-	1e-13	At5g35980	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.97	PtpAffx.4529.1.S1_at	CK091600	hypothetical protein	-	4e-138	At5g03290	isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.97	PtpAffx.138176.1.S1_s_at	BU883966	hypothetical protein	-	7e-5	At2g17720	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.97	PtpAffx.200567.1.S1_at	pmrna1120	hypothetical protein	-	2e-39	At1g71190	SAG18 (SENESCENCE ASSOCIATED GENE 18)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.96	PtpAffx.2152.2.S1_a_at	CA826185	hypothetical protein	-	2e-5	At3g13410	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.97	PtpAffx.211143.1.S1_at	pmrna21896	hypothetical protein	-	1e-13	At5g35980	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.7	97.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.5	97.1	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.7	96.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.4	95.9	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6	84.5	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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