Co-expression analysis

Gene ID	Ptp.1173.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At2g44610: RAB6A (HF=2e+0)
Module size	6 genes
NF	0.02
%ile	4.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	84.9	0.74	Ptp.1173.1.A1_at	CK089675	-	-	2e+0	At2g44610	RAB6A	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.86	PtpAffx.149374.1.S1_at	CX653962	hypothetical protein	-	2e-12	At1g64390	AtGH9C2 (Arabidopsis thaliana glycosyl hydrolase 9C2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.86	PtpAffx.214373.1.S1_at	pmrna27966	hypothetical protein	-	8e-2	At2g18969	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.83	PtpAffx.199.1.S1_at	CK089365	hypothetical protein	-	8e-1	At1g32780	alcohol dehydrogenase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.86	PtpAffx.24322.1.A1_a_at	CV264591	hypothetical protein	-	4e-1	At3g23460	cyclopropane fatty acid synthase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.73	PtpAffx.39343.1.S1_at	CK096330	type-a response regulator	-	8e-3	At2g41310	ATRR3 (RESPONSE REGULATOR 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.1	98.5	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.9	92.5	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7	91.8	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.3	89.8	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.1	88.6	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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