Co-expression analysis

Gene ID	Ptp.1134.1.S1_x_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g79040: PSBR (photosystem II subunit R) (HF=6e-10)
Module size	6 genes
NF	0.67
%ile	94.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	97.0	0.98	Ptp.1134.1.S1_x_at	CV280712	hypothetical protein	-	6e-10	At1g79040	PSBR (photosystem II subunit R)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.99	Ptp.1238.1.S1_at	CV276962	hypothetical protein	-	8e-75	At5g09660	PMDH2 (peroxisomal NAD-malate dehydrogenase 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.97	Ptp.819.1.S1_s_at	BU832654	hypothetical protein	-	4e-38	At4g01150	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.99	Ptp.5244.1.S1_x_at	CV271589	-	-	8e-6	At4g32260	ATP synthase family	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.99	Ptp.5244.1.S1_s_at	CV271589	hypothetical protein	-	8e-6	At4g32260	ATP synthase family	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.98	Ptp.2177.1.S1_x_at	CV281224	hypothetical protein	-	1e-17	At2g46820	PSI-P (PHOTOSYSTEM I P SUBUNIT)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	93.7	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.9	92.5	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.7	91.8	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6	91.3	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6	91.3	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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