Co-expression analysis

Gene ID	Ptp.1122.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g30510: RPS1 (RIBOSOMAL PROTEIN S1) (HF=3e-92)
Module size	6 genes
NF	0.62
%ile	91.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	73.7	0.93	Ptp.1122.1.S1_at	AJ778652	hypothetical protein	-	3e-92	At5g30510	RPS1 (RIBOSOMAL PROTEIN S1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.83	97.0	0.93	PtpAffx.3173.3.S1_at	BI071892	-	-	4e-61	At3g55800	SBPASE (sedoheptulose-bisphosphatase)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.95	PtpAffx.22609.2.S1_a_at	BU885016	hypothetical protein	-	1e-4	At2g33180	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.95	Ptp.5923.1.S1_at	BU811613	hypothetical protein	-	9e-3	At3g51510	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.94	PtpAffx.202613.1.S1_at	pmrna5227	hypothetical protein	-	6e-2	At1g66840	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.95	PtpAffx.151180.1.S1_at	CX654538	one helix protein 2	-	4e-26	At1g34000	OHP2 (ONE-HELIX PROTEIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	94.5	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9	87.2	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.8	86.4	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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