Co-expression analysis

Gene ID	Ptp.100.1.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At2g41790: peptidase M16 family protein / insulinase family protein (HF=4e-5)
Module size	6 genes
NF	0.73
%ile	97.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.98	Ptp.100.1.S1_a_at	BU834161	-	-	4e-5	At2g41790	peptidase M16 family protein / insulinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.83	97.0	0.98	Ptp.100.2.S1_at	CK088962	hypothetical protein	-	1e+0	At3g56770	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.98	Ptp.4937.1.S1_at	DN492651	-	-	6e-1	At1g79970	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.98	Ptp.2543.1.S1_at	CK092566	hypothetical protein	-	7e+0	At3g59390	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.98	PtpAffx.123671.1.A1_at	CV261233	endoplasmic reticulum [ER]-type calcium ATPase /// endoplasmic reticulum [ER]-type calcium ATPase	-	6e-2	At1g07810	ECA1 (ER-TYPE CA2+-ATPASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.99	Ptp.3383.1.S1_at	DN488137	hypothetical protein	-	2e-25	At2g21270	ubiquitin fusion degradation UFD1 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.8	97.4	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.5	96.1	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.2	95.6	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.5	94.3	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.1	93.2	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328284	Populus x canescens root control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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