Co-expression analysis

Gene ID	PsAffx.psZG009xA07f_at
Gene name
Homology with Arabidopsis	Similar to At2g17950: WUS (WUSCHEL) (HF=8e-1)
Module size	40 genes
NF	0.52
%ile	82.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.6	0.88	PsAffx.psZG009xA07f_at	PsAffx.psZG009xA07f	-	-	8e-1	At2g17950	WUS (WUSCHEL)	O.I.	H.G.	S.X.	Please select
0.74	89.2	0.91	PsAffx.C215000004_at	PsAffx.C215000004	-	-	8e-2	At3g53470	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	88.9	0.91	PsAffx.C135000021_at	PsAffx.C135000021	-	-	4e-2	At5g42790	PAF1	O.I.	H.G.	S.X.	Please select
0.71	87.8	0.90	PsAffx.C78000021_at	PsAffx.C78000021	-	-	6e-2	At1g70900	unknown protein	O.I.	H.G.	S.X.	Please select
0.66	84.0	0.90	PsAffx.psMC007xD18f_s_at	PsAffx.psMC007xD18f	-	-	1e+1	At3g59370	unknown protein	O.I.	H.G.	S.X.	Please select
0.65	83.8	0.92	PsAffx.C200000014_at	PsAffx.C200000014	-	-	1e-1	At3g14130	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.91	PsAffx.psMA018xC19f_s_at	PsAffx.psMA018xC19f	-	-	4e+0	At5g53250	AGP22 (ARABINOGALACTAN PROTEIN 22)	O.I.	H.G.	S.X.	Please select
0.59	79.5	0.90	PsAffx.psZS003xG08f_at	PsAffx.psZS003xG08f	-	-	1e+0	At4g20260	DREPP plasma membrane polypeptide family protein	O.I.	H.G.	S.X.	Please select
0.58	78.8	0.92	PsAffx.C277000003_s_at	PsAffx.C277000003	-	-	8e-2	At3g15060	AtRABA1g (Arabidopsis Rab GTPase homolog A1g)	O.I.	H.G.	S.X.	Please select
0.58	78.8	0.91	PsAffx.CL728Contig1_at	PsAffx.CL728Contig1	-	-	1e+0	At1g23205	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.89	PsAffx.CL720Contig1_at	PsAffx.CL720Contig1	-	-	8e+0	At3g43574	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.90	PsAffx.CL363Contig1_at	PsAffx.CL363Contig1	-	-	9e+0	At3g50685	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	78.2	0.91	PsAffx.CL2207Contig1_at	PsAffx.CL2207Contig1	-	-	3e-1	At2g33385	arpc2b (actin-related protein C2B)	O.I.	H.G.	S.X.	Please select
0.56	78.2	0.91	PsAffx.C21000053_at	PsAffx.C21000053	-	-	1e+0	At5g57590	BIO1 (biotin auxotroph 1)	O.I.	H.G.	S.X.	Please select
0.56	78.2	0.90	PsAffx.C95000059_at	PsAffx.C95000059	-	-	2e+0	At5g15640	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.	Please select
0.56	78.2	0.91	PsAffx.C67000061_s_at	PsAffx.C67000061	-	-	8e-1	At5g52200	unknown protein	O.I.	H.G.	S.X.	Please select
0.54	74.8	0.91	PsAffx.C35000092_at	PsAffx.C35000092	-	-	2e+0	At5g62720	integral membrane HPP family protein	O.I.	H.G.	S.X.	Please select
0.54	74.8	0.90	PsAffx.C244000010_at	PsAffx.C244000010	-	-	6e+0	At5g33390	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.94	PsAffx.C103000011_at	PsAffx.C103000011	-	-	4e+0	At5g63905	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	73.1	0.91	PsAffx.C7000122_at	PsAffx.C7000122	-	-	5e+0	At4g00100	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A)	O.I.	H.G.	S.X.	Please select
0.51	72.3	0.91	PsAffx.CL357Contig1_at	PsAffx.CL357Contig1	-	-	7e+0	At4g24230	ACBP3 (ACYL-COA-BINDING DOMAIN 3)	O.I.	H.G.	S.X.	Please select
0.51	72.3	0.91	PsAffx.C197000019_at	PsAffx.C197000019	-	-	1e+0	At4g35490	MRPL11 (MITOCHONDRIAL RIBOSOMAL PROTEIN L11)	O.I.	H.G.	S.X.	Please select
0.51	72.3	0.91	PsAffx.C167000014_at	PsAffx.C167000014	-	-	1e+0	At2g27930	binding	O.I.	H.G.	S.X.	Please select
0.51	72.3	0.90	PsAffx.CL2001Contig1_at	PsAffx.CL2001Contig1	-	-	4e+0	At1g25250	AtIDD16 (Arabidopsis thaliana Indeterminate(ID)-Domain 16)	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.91	PsAffx.C29000074_at	PsAffx.C29000074	-	-	5e+0	At5g35475	-	O.I.	H.G.	S.X.	Please select
0.48	67.7	0.92	PsAffx.CL869Contig1_at	PsAffx.CL869Contig1	-	-	2e+0	At3g06145	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.91	PsAffx.CL860Contig1_at	PsAffx.CL860Contig1	-	-	8e-2	At2g40510	40S ribosomal protein S26 (RPS26A)	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.91	PsAffx.C114000033_s_at	PsAffx.C114000033	-	-	1e+0	At4g26580	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.90	PsAffx.C148000016_at	PsAffx.C148000016	-	-	6e-5	At2g36250	FTSZ2-1	O.I.	H.G.	S.X.	Please select
0.45	63.9	0.88	PsAffx.CL1633Contig1_at	PsAffx.CL1633Contig1	-	-	2e+1	At3g56340	40S ribosomal protein S26 (RPS26C)	O.I.	H.G.	S.X.	Please select
0.45	63.9	0.90	PsAffx.C146000020_at	PsAffx.C146000020	-	-	1e-2	At4g39870	-	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.91	GmaAffx.35370.1.S1_s_at	BE583805	-	-	1e+1	At5g47455	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.91	PsAffx.CL238Contig1_at	PsAffx.CL238Contig1	-	-	5e-1	At4g13075	RALFL30 (RALF-LIKE 30)	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.92	PsAffx.CL2381Contig1_at	PsAffx.CL2381Contig1	-	-	3e+0	At3g13882	structural constituent of ribosome	O.I.	H.G.	S.X.	Please select
0.41	58.1	0.90	PsAffx.C77000031_s_at	PsAffx.C77000031	-	-	1e-2	At1g70280	NHL repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.92	PsAffx.C257000015_s_at	PsAffx.C257000015	-	-	2e+0	At4g01750	RGXT2 (rhamnogalacturonan xylosyltransferase 2)	O.I.	H.G.	S.X.	Please select
0.34	47.2	0.93	PsAffx.C173000014_at	PsAffx.C173000014	-	-	3e-1	At2g45800	LIM domain-containing protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.90	PsAffx.C167000023_at	PsAffx.C167000023	-	-	2e+0	At2g36261	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	26.6	0.93	PsAffx.C55000025_s_at	PsAffx.C55000025	-	-	5e-1	At3g10400	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.19	23.7	0.92	PsAffx.CL1206Contig1_at	PsAffx.CL1206Contig1	-	-	2e+0	At5g49280	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.7	99.1	GSM294303	54_3153.2I.R9I2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.2	99.0	GSM171675	28_W.I.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
8.1	99.0	GSM171611	13_W.E.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
7.8	99.0	GSM171703	4_W.E.I.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
7.0	98.8	GSM171660	24_Y.I.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.8	98.7	GSM171680	29_Y.F.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.8	98.7	GSM171619	15_W.F.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.4	98.6	GSM171693	31_Z.I.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.3	98.6	GSM294092	4_3111.2G.R9G1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.8	98.4	GSM171606	12_V.I.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.7	98.4	GSM171677	28_Z.E.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.6	98.3	GSM293015	20_1089.1N.R055L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.5	98.3	GSM171646	21_V.E.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.5	98.3	GSM171664	25_Y.E.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.3	98.2	GSM293113	28_C047.1O.R9O2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.3	98.2	GSM171634	19_V.F.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.1	98.1	GSM171725	9_Z.F.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.1	98.1	GSM171712	6_Y.L.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.0	98.0	GSM292966	44_C221.1M.R9M1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0	98.0	GSM292384	59_C093.1F.R9F1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0	98.0	GSM171720	8_Y.E.I.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.9	98.0	GSM171719	8_W.L.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.8	97.9	GSM294151	16_3139.2H.R9H3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7	97.8	GSM292405	9_C101.1F.R9F2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7	97.8	GSM293213	93_C039.1O.SLO1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6	97.7	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6	97.7	GSM294262	20_2405.2I.R084L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6	97.7	GSM171599	10_W.I.M.3, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.6	97.7	GSM293226	15_C065.1P.R9P2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5	97.7	GSM171710	6_V.L.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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