Co-expression analysis

Gene ID	PsAffx.psMY011iF07r_at
Gene name
Homology with Arabidopsis	Similar to At5g49560: unknown protein (HF=8e+0)
Module size	40 genes
NF	0.40
%ile	69.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	99.1	0.79	PsAffx.psMY011iF07r_at	PsAffx.psMY011iF07r	-	-	8e+0	At5g49560	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.85	PsAffx.C7000072_at	PsAffx.C7000072	-	-	2e-2	At1g69210	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.90	PsAffx.CL720Contig1_at	PsAffx.CL720Contig1	-	-	8e+0	At3g43574	unknown protein	O.I.	H.G.	S.X.	Please select
0.54	74.8	0.87	PsAffx.C252000006_at	PsAffx.C252000006	-	-	2e+0	At1g24450	NFD2 (NUCLEAR FUSION DEFECTIVE 2)	O.I.	H.G.	S.X.	Please select
0.52	73.1	0.87	PsAffx.C45000088_s_at	PsAffx.C45000088	-	-	4e+0	At1g10690	unknown protein	O.I.	H.G.	S.X.	Please select
0.51	72.3	0.87	PsAffx.C2000158_at	PsAffx.C2000158	-	-	1e-2	At3g55930	RNA splicing factor-related	O.I.	H.G.	S.X.	Please select
0.49	68.3	0.89	PsAffx.CL982Contig1_at	PsAffx.CL982Contig1	-	-	2e+1	At5g06240	emb2735 (embryo defective 2735)	O.I.	H.G.	S.X.	Please select
0.49	68.3	0.90	PsAffx.C110000043_at	PsAffx.C110000043	-	-	1e+1	At5g37740	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.93	PsAffx.C103000011_at	PsAffx.C103000011	-	-	4e+0	At5g63905	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.91	PsAffx.C7000122_at	PsAffx.C7000122	-	-	5e+0	At4g00100	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A)	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.91	PsAffx.C67000061_s_at	PsAffx.C67000061	-	-	8e-1	At5g52200	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.87	PsAffx.C54000028_at	PsAffx.C54000028	-	-	1e+1	At5g38470	DNA repair protein RAD23, putative	O.I.	H.G.	S.X.	Please select
0.45	63.9	0.91	PsAffx.C215000004_at	PsAffx.C215000004	-	-	8e-2	At3g53470	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	63.9	0.92	PsAffx.C29000074_at	PsAffx.C29000074	-	-	5e+0	At5g35475	-	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.91	GmaAffx.35370.1.S1_s_at	BE583805	-	-	1e+1	At5g47455	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.89	PsAffx.C179000017_at	PsAffx.C179000017	-	-	3e+0	At5g62500	ATEB1B (END BINDING PROTEIN 1B)	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.92	PsAffx.CL728Contig1_at	PsAffx.CL728Contig1	-	-	1e+0	At1g23205	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.91	PsAffx.CL730Contig1_at	PsAffx.CL730Contig1	-	-	4e+0	At5g37260	RVE2 (REVEILLE 2)	O.I.	H.G.	S.X.	Please select
0.41	58.1	0.89	PsAffx.C162000015_at	PsAffx.C162000015	-	-	1e+0	At2g28671	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.91	PsAffx.CL2207Contig1_at	PsAffx.CL2207Contig1	-	-	3e-1	At2g33385	arpc2b (actin-related protein C2B)	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.88	PsAffx.CL1619Contig1_s_at	PsAffx.CL1619Contig1	-	-	7e+0	At4g28280	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.86	PsAffx.CL724Contig1_at	PsAffx.CL724Contig1	-	-	1e+0	At3g53430	60S ribosomal protein L12 (RPL12B)	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.91	PsAffx.CL860Contig1_at	PsAffx.CL860Contig1	-	-	8e-2	At2g40510	40S ribosomal protein S26 (RPS26A)	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.89	PsAffx.psMY009iD11r_at	PsAffx.psMY009iD11r	-	-	9e-1	At1g10865	-	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.91	PsAffx.C50000062_at	PsAffx.C50000062	-	-	1e+0	At3g10300	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.90	PsAffx.C148000016_at	PsAffx.C148000016	-	-	6e-5	At2g36250	FTSZ2-1	O.I.	H.G.	S.X.	Please select
0.34	47.2	0.90	PsAffx.psZS008xC17f_s_at	PsAffx.psZS008xC17f	-	-	7e-4	At1g12665	-	O.I.	H.G.	S.X.	Please select
0.34	47.2	0.92	PsAffx.CL869Contig1_at	PsAffx.CL869Contig1	-	-	2e+0	At3g06145	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	47.2	0.92	PsAffx.psHB020xH07f_at	PsAffx.psHB020xH07f	-	-	9e+0	At4g29590	methyltransferase	O.I.	H.G.	S.X.	Please select
0.34	47.2	0.90	PsAffx.C135000021_at	PsAffx.C135000021	-	-	4e-2	At5g42790	PAF1	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.90	PsAffx.C200000014_at	PsAffx.C200000014	-	-	1e-1	At3g14130	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.90	PsAffx.C1000069_at	PsAffx.C1000069	-	-	3e-1	At1g66140	ZFP4 (ZINC FINGER PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.90	PsAffx.CL2360Contig1_at	PsAffx.CL2360Contig1	-	-	2e-1	At5g20010	RAN-1	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.89	PsAffx.C77000031_s_at	PsAffx.C77000031	-	-	1e-2	At1g70280	NHL repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.24	30.9	0.90	PsAffx.psMY007iE09r_s_at	PsAffx.psMY007iE09r	-	-	3e+0	At4g24590	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	30.9	0.92	PsAffx.psMC003xP07f_at	PsAffx.psMC003xP07f	-	-	9e+0	At4g28440	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.87	PsAffx.C61000014_at	PsAffx.C61000014	-	-	3e-10	At5g09730	BXL3 (beta-xylosidase 3)	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.93	PsAffx.CL1416Contig1_at	PsAffx.CL1416Contig1	-	-	1e-8	At2g34250	protein transport protein sec61, putative	O.I.	H.G.	S.X.	Please select
0.19	23.7	0.91	GmaAffx.80926.1.S1_s_at	BE584193	-	-	1e+1	At3g02310	SEP2 (SEPALLATA 2)	O.I.	H.G.	S.X.	Please select
0.18	22.3	0.93	PsAffx.C55000025_s_at	PsAffx.C55000025	-	-	5e-1	At3g10400	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.7	99.1	GSM294303	54_3153.2I.R9I2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.4	98.9	GSM171703	4_W.E.I.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.5	98.7	GSM293113	28_C047.1O.R9O2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.3	98.6	GSM171675	28_W.I.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.2	98.6	GSM294092	4_3111.2G.R9G1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.9	98.5	GSM293015	20_1089.1N.R055L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.8	98.4	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.7	98.4	GSM171611	13_W.E.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.3	98.2	GSM292384	59_C093.1F.R9F1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.3	98.2	GSM171619	15_W.F.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.2	98.1	GSM171680	29_Y.F.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.2	98.1	GSM292405	9_C101.1F.R9F2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.1	98.1	GSM171660	24_Y.I.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.0	98.0	GSM293213	93_C039.1O.SLO1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.9	98.0	GSM171720	8_Y.E.I.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.9	98.0	GSM294151	16_3139.2H.R9H3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.8	97.9	GSM171693	31_Z.I.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.8	97.9	GSM293226	15_C065.1P.R9P2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7	97.8	GSM292966	44_C221.1M.R9M1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7	97.8	GSM171677	28_Z.E.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.7	97.8	GSM293194	76_1133.1O.R084L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6	97.7	GSM293071	71_1055.1N.R032L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6	97.7	GSM171664	25_Y.E.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.5	97.7	GSM294262	20_2405.2I.R084L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4	97.6	GSM293080	7_C033.1N.R9N3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3	97.5	GSM244920	5_VP9.I5L2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
4.2	97.4	GSM171606	12_V.I.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.2	97.4	GSM171646	21_V.E.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.2	97.4	GSM293236	24_1207.1P.R128L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1	97.3	GSM293756	88_2113.2C.R285L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage