Co-expression analysis

Gene ID	PsAffx.psML003xD19f_s_at
Gene name
Homology with Arabidopsis	Similar to At3g55050: serine/threonine protein phosphatase 2C (PP2C6) (HF=9e+0)
Module size	29 genes
NF	0.65
%ile	92.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.88	93.4	0.94	PsAffx.psML003xD19f_s_at	PsAffx.psML003xD19f	-	-	9e+0	At3g55050	serine/threonine protein phosphatase 2C (PP2C6)	O.I.	H.G.	S.X.	Please select
0.87	93.2	0.97	PsAffx.CL132Contig1_at	PsAffx.CL132Contig1	-	-	1e-2	At3g63080	ATGPX5 (glutathione peroxidase 5)	O.I.	H.G.	S.X.	Please select
0.83	92.5	0.95	GmaAffx.53616.1.S1_s_at	BE583708	-	-	6e-1	At4g37780	MYB87 (MYB DOMAIN PROTEIN 87)	O.I.	H.G.	S.X.	Please select
0.78	90.6	0.96	PsAffx.CL499Contig1_at	PsAffx.CL499Contig1	-	-	8e+0	At4g08190	Ras-related GTP-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.75	89.5	0.97	PsAffx.CL174Contig1_at	PsAffx.CL174Contig1	-	-	4e-7	At4g22220	ISU1	O.I.	H.G.	S.X.	Please select
0.75	89.5	0.96	PsAffx.psHB015xA08f_s_at	PsAffx.psHB015xA08f	-	-	9e+0	At3g26460	major latex protein-related / MLP-related	O.I.	H.G.	S.X.	Please select
0.73	88.9	0.97	PsAffx.C85000012_s_at	PsAffx.C85000012	-	-	9e-1	At1g07860	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	88.9	0.96	PsAffx.C11000088_at	PsAffx.C11000088	-	-	2e+0	At4g29340	PRF4 (PROFILIN 4)	O.I.	H.G.	S.X.	Please select
0.72	88.1	0.97	PsAffx.CL186Contig1_at	PsAffx.CL186Contig1	-	-	2e+0	At4g21450	vesicle-associated membrane family protein / VAMP family protein	O.I.	H.G.	S.X.	Please select
0.72	88.1	0.97	PsAffx.CL1119Contig1_at	PsAffx.CL1119Contig1	-	-	1e+0	At4g37830	cytochrome c oxidase-related	O.I.	H.G.	S.X.	Please select
0.72	88.1	0.97	PsAffx.CL127Contig1_at	PsAffx.CL127Contig1	-	-	3e-1	At1g34245	-	O.I.	H.G.	S.X.	Please select
0.71	87.8	0.97	PsAffx.C76000032_at	PsAffx.C76000032	-	-	5e-1	At5g64090	-	O.I.	H.G.	S.X.	Please select
0.71	87.8	0.97	PsAffx.C11000047_at	PsAffx.C11000047	-	-	3e-1	At5g28660	-	O.I.	H.G.	S.X.	Please select
0.68	86.4	0.96	PsAffx.CL315Contig1_at	PsAffx.CL315Contig1	-	-	8e-1	At2g13290	glycosyl transferase family 17 protein	O.I.	H.G.	S.X.	Please select
0.63	82.9	0.96	PsAffx.psHB039xF23f_s_at	PsAffx.psHB039xF23f	-	-	1e-1	At1g22520	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	82.9	0.97	PsAffx.CL1118Contig1_at	PsAffx.CL1118Contig1	-	-	4e+0	At1g23110	unknown protein	O.I.	H.G.	S.X.	Please select
0.62	82.1	0.96	PsAffx.C43000092_at	PsAffx.C43000092	-	-	5e-1	At5g02260	ATEXPA9 (ARABIDOPSIS THALIANA EXPANSIN A9)	O.I.	H.G.	S.X.	Please select
0.62	82.1	0.97	PsAffx.psHB015xA08f_at	PsAffx.psHB015xA08f	-	-	9e+0	At3g26460	major latex protein-related / MLP-related	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.97	PsAffx.CL6Contig4_at	PsAffx.CL6Contig4	-	-	7e-5	At3g21720	ICL (ISOCITRATE LYASE)	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.96	PsAffx.CL1265Contig1_at	PsAffx.CL1265Contig1	-	-	1e+0	At3g60720	PDLP8 (PLASMODESMATA-LOCATED PROTEIN 8)	O.I.	H.G.	S.X.	Please select
0.59	79.5	0.97	PsAffx.CL1866Contig1_at	PsAffx.CL1866Contig1	-	-	2e-1	At1g60830	U2 snRNP auxiliary factor large subunit, putative	O.I.	H.G.	S.X.	Please select
0.58	78.8	0.96	PsAffx.CL1Contig2_at	PsAffx.CL1Contig2	-	-	8e-3	At5g58420	40S ribosomal protein S4 (RPS4D)	O.I.	H.G.	S.X.	Please select
0.58	78.8	0.96	PsAffx.C1000081_at	PsAffx.C1000081	-	-	8e-1	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.96	PsAffx.CL351Contig1_at	PsAffx.CL351Contig1	-	-	2e+0	At2g01080	-	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.95	GmaAffx.44544.1.S1_s_at	BE583950	-	-	3e-3	At5g51820	PGM (PHOSPHOGLUCOMUTASE)	O.I.	H.G.	S.X.	Please select
0.52	73.1	0.96	PsAffx.CL102Contig1_at	PsAffx.CL102Contig1	-	-	2e-1	At1g72080	unknown protein	O.I.	H.G.	S.X.	Please select
0.51	72.3	0.97	PsAffx.CL186Contig1_s_at	PsAffx.CL186Contig1	-	-	2e+0	At4g21450	vesicle-associated membrane family protein / VAMP family protein	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.97	GmaAffx.64860.1.S1_s_at	BM954536	-	-	3e+0	At5g24860	FPF1 (FLOWERING PROMOTING FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.95	GmaAffx.58235.1.S1_at	BE583725	-	-	1e+1	At2g15760	calmodulin-binding protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.7	99.6	GSM171675	28_W.I.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
14.0	99.6	GSM171611	13_W.E.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
12.8	99.5	GSM171680	29_Y.F.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
11.9	99.4	GSM171693	31_Z.I.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
11.8	99.4	GSM171660	24_Y.I.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
11.7	99.4	GSM171619	15_W.F.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
10.7	99.4	GSM171677	28_Z.E.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
10.7	99.4	GSM171725	9_Z.F.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
10.6	99.3	GSM171606	12_V.I.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
10.2	99.3	GSM171646	21_V.E.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
10.1	99.3	GSM171664	25_Y.E.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
9.6	99.2	GSM171634	19_V.F.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
8.8	99.1	GSM171712	6_Y.L.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
8.7	99.1	GSM171599	10_W.I.M.3, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
8.5	99.1	GSM171685	2_Z.L.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
8.0	99.0	GSM171719	8_W.L.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
7.3	98.9	GSM171710	6_V.L.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.8	98.7	GSM171656	23_Y.E.M.3, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.4	98.6	GSM171676	28_Y.I.M.3, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.1	98.5	GSM171671	27_W.E.M.3, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.9	98.5	GSM171641	1_Z.I.M.3, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.8	98.4	GSM171633	18_Y.F.M.3, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.8	98.4	GSM171687	30_W.F.M.3, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.7	98.4	GSM171604	11_Y.L.M.3, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.4	98.2	GSM171627	17_W.L.M.3, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.0	98.0	GSM171631	18_V.I.M.3, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.9	98.0	GSM171721	8_Z.E.M.3, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.7	97.8	GSM171681	29_Z.L.M.3, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.3	97.5	GSM171694	32_V.L.M.3, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.1	97.3	GSM171618	15_V.E.M.3, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage