Co-expression analysis

Gene ID	PsAffx.psMC009xE23f_at
Gene name
Homology with Arabidopsis	Similar to At5g03550: - (HF=1e+1)
Module size	6 genes
NF	0.57
%ile	87.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	65.5	0.77	PsAffx.psMC009xE23f_at	PsAffx.psMC009xE23f	-	-	1e+1	At5g03550	-	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.82	GmaAffx.60715.1.S1_at	BU089784	-	-	5e+0	At5g53400	nuclear movement family protein	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.86	HgAffx.3584.1.A1_s_at	CK349106	-	-	2e+0	At2g37110	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.81	PsAffx.CL1893Contig1_at	PsAffx.CL1893Contig1	-	-	1e-1	At5g42980	ATTRX3 (THIOREDOXIN 3)	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.81	GmaAffx.60715.1.S1_x_at	BU089784	-	-	5e+0	At5g53400	nuclear movement family protein	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.82	PsAffx.C10000051_at	PsAffx.C10000051	-	-	1e+0	At5g09805	IDL3 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.2	98.6	GSM147947	Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
5.9	98.5	GSM294428	83_2450.2J.R161P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.6	98.3	GSM294431	86_2456.2J.R220P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.2	98.1	GSM294437	91_2465.2J.R186U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.2	98.1	GSM294423	79_2455.2J.R220L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.1	98.1	GSM294427	82_2447.2J.R119L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.1	98.1	GSM294416	72_2472.2J.R108P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0	98.0	GSM294429	84_2437.2J.R091U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.9	98.0	GSM294426	81_3163.2J.SLJ1U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.8	97.9	GSM294380	3_2464.2J.R260P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7	97.8	GSM147950	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.7	97.8	GSM294403	60_2462.2J.R176P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6	97.7	GSM294432	87_3176.2J.SLJ3P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6	97.7	GSM147956	Laser capture microdissected (LCM) outer integument at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.4	97.6	GSM294436	90_2445.2J.R294U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3	97.5	GSM294439	93_2473.2J.R052U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3	97.5	GSM294375	35_2473.2J.R052L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2	97.4	GSM294422	78_2467.2J.R216U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2	97.4	GSM294409	66_3169.2J.R9J2U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2	97.4	GSM294425	80_3168.2J.R9J1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2	97.4	GSM294421	77_2442.2J.R198P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2	97.4	GSM294394	52_2477.2J.R258U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2	97.4	GSM294399	57_2433.2J.R090L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1	97.3	GSM147944	Laser capture microdissected (LCM) endothelium at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.0	97.2	GSM294393	51_2448.2J.R119P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0	97.2	GSM294397	55_2458.2J.R073P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0	97.2	GSM294430	85_2455.2J.R220U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9	97.1	GSM294369	2_2439.2J.R135L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9	97.1	GSM147953	Laser capture microdissected (LCM) inner integument at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.9	97.1	GSM294376	36_3180.2J.V7J3P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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