Co-expression analysis

Gene ID	PsAffx.psMC006xG09f_s_at
Gene name
Homology with Arabidopsis	Similar to At4g08280: - (HF=1e+1)
Module size	26 genes
NF	0.53
%ile	84.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.81	91.7	0.96	PsAffx.psMC006xG09f_s_at	PsAffx.psMC006xG09f	-	-	1e+1	At4g08280	-	O.I.	H.G.	S.X.	Please select
0.73	88.9	0.96	PsAffx.CL264Contig1_at	PsAffx.CL264Contig1	-	-	3e+1	At4g13830	J20 (DNAJ-LIKE 20)	O.I.	H.G.	S.X.	Please select
0.72	88.1	0.97	PsAffx.CL66Contig4_at	PsAffx.CL66Contig4	-	-	2e+0	At3g49470	NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.72	88.1	0.97	PsAffx.CL210Contig1_s_at	PsAffx.CL210Contig1	-	-	5e+0	At3g47490	HNH endonuclease domain-containing protein	O.I.	H.G.	S.X.	Please select
0.70	87.1	0.97	PsAffx.CL2042Contig1_at	PsAffx.CL2042Contig1	-	-	1e+0	At1g42080	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.97	PsAffx.CL821Contig1_at	PsAffx.CL821Contig1	-	-	1e+0	At3g25170	RALFL26 (ralf-like 26)	O.I.	H.G.	S.X.	Please select
0.66	84.0	0.96	PsAffx.CL2436Contig1_at	PsAffx.CL2436Contig1	-	-	5e-2	At5g59360	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.97	PsAffx.CL172Contig1_at	PsAffx.CL172Contig1	-	-	2e+0	At4g02840	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select
0.59	79.5	0.97	PsAffx.CL136Contig1_at	PsAffx.CL136Contig1	-	-	2e+0	At1g28580	GDSL-motif lipase, putative	O.I.	H.G.	S.X.	Please select
0.59	79.5	0.96	PsAffx.CL460Contig1_at	PsAffx.CL460Contig1	-	-	2e+0	At5g19440	cinnamyl-alcohol dehydrogenase, putative (CAD)	O.I.	H.G.	S.X.	Please select
0.58	78.8	0.97	GmaAffx.80936.1.S1_s_at	BE588267	-	-	1e-2	At5g50080	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.58	78.8	0.97	PsAffx.CL2Contig12_at	PsAffx.CL2Contig12	-	-	8e-1	At2g42280	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.97	PsAffx.CL1152Contig1_s_at	PsAffx.CL1152Contig1	-	-	4e+0	At3g07525	ATG10 (autophagy 10)	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.96	PsAffx.CL230Contig1_at	PsAffx.CL230Contig1	-	-	1e-2	At2g20140	26S protease regulatory complex subunit 4, putative	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.96	PsAffx.CL221Contig1_at	PsAffx.CL221Contig1	-	-	2e+0	At5g24460	unknown protein	O.I.	H.G.	S.X.	Please select
0.51	72.3	0.97	PsAffx.CL243Contig1_at	PsAffx.CL243Contig1	-	-	4e-3	At5g08530	CI51 (51 kDa subunit of complex I)	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.97	PsAffx.CL175Contig1_at	PsAffx.CL175Contig1	-	-	2e+0	At1g49150	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.96	PsAffx.CL224Contig1_at	PsAffx.CL224Contig1	-	-	5e+0	At5g20180	ribosomal protein L36 family protein	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.96	PsAffx.CL111Contig1_at	PsAffx.CL111Contig1	-	-	9e+0	At3g02000	ROXY1	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.97	PsAffx.CL483Contig1_at	PsAffx.CL483Contig1	-	-	8e+0	At4g01670	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.98	PsAffx.CL74Contig1_at	PsAffx.CL74Contig1	-	-	4e-16	At4g38740	ROC1 (ROTAMASE CYP 1)	O.I.	H.G.	S.X.	Please select
0.41	58.1	0.97	PsAffx.CL72Contig2_at	PsAffx.CL72Contig2	-	-	3e-1	At2g25190	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.96	PsAffx.CL103Contig1_at	PsAffx.CL103Contig1	-	-	3e-1	At2g31862	-	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.98	PsAffx.CL82Contig1_at	PsAffx.CL82Contig1	-	-	4e-32	At2g47170	ARF1A1C	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.97	PsAffx.CL112Contig1_at	PsAffx.CL112Contig1	-	-	9e-7	At1g15690	AVP1	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.96	PsAffx.C1000027_s_at	PsAffx.C1000027	-	-	3e-2	At5g23540	26S proteasome regulatory subunit, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.2	99.4	GSM294303	54_3153.2I.R9I2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.9	99.2	GSM171703	4_W.E.I.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
7.7	99.0	GSM171675	28_W.I.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
7.3	98.9	GSM293015	20_1089.1N.R055L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.3	98.9	GSM171611	13_W.E.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
7.2	98.9	GSM294092	4_3111.2G.R9G1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.0	98.8	GSM293113	28_C047.1O.R9O2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.5	98.7	GSM292384	59_C093.1F.R9F1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.5	98.7	GSM171693	31_Z.I.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.3	98.6	GSM293756	88_2113.2C.R285L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.3	98.6	GSM294151	16_3139.2H.R9H3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.3	98.6	GSM293226	15_C065.1P.R9P2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.1	98.5	GSM171680	29_Y.F.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.1	98.5	GSM171619	15_W.F.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.0	98.5	GSM171660	24_Y.I.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.0	98.5	GSM171677	28_Z.E.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.8	98.4	GSM293213	93_C039.1O.SLO1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.8	98.4	GSM293294	77_C067.1P.R9P3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.7	98.4	GSM292405	9_C101.1F.R9F2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.6	98.3	GSM171725	9_Z.F.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.5	98.3	GSM293080	7_C033.1N.R9N3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.5	98.3	GSM292966	44_C221.1M.R9M1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.4	98.2	GSM293194	76_1133.1O.R084L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.3	98.2	GSM171606	12_V.I.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.3	98.2	GSM244890	36_SLO.I2W2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
5.3	98.2	GSM293071	71_1055.1N.R032L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.2	98.1	GSM294150	15_3131.2H.R9H1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.2	98.1	GSM171646	21_V.E.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.2	98.1	GSM294262	20_2405.2I.R084L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.2	98.1	GSM171664	25_Y.E.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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