Co-expression analysis

Gene ID	PsAffx.psHB012xG08f_at
Gene name
Homology with Arabidopsis	Similar to At1g53580: GLY3 (GLYOXALASE II 3) (HF=2e-1)
Module size	14 genes
NF	0.43
%ile	73.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	83.4	0.94	PsAffx.psHB012xG08f_at	PsAffx.psHB012xG08f	-	-	2e-1	At1g53580	GLY3 (GLYOXALASE II 3)	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.94	HgAffx.1675.1.S1_at	CK351015	-	-	2e+0	At2g32550	rcd1-like cell differentiation family protein	O.I.	H.G.	S.X.	Please select
0.56	78.2	0.94	PsAffx.C20000118_s_at	PsAffx.C20000118	-	-	6e-2	At3g56440	AtATG18d	O.I.	H.G.	S.X.	Please select
0.54	74.8	0.94	HgAffx.19746.1.S1_at	CD748943	-	-	2e+0	At2g44745	WRKY family transcription factor	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.94	HgAffx.11255.1.S1_at	CB935195	-	-	5e+0	At3g09050	unknown protein	O.I.	H.G.	S.X.	Please select
0.49	68.3	0.93	HgAffx.18353.1.S1_at	CD748145	-	-	1e+0	At5g50915	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.45	63.9	0.94	PsAffx.psMA010xD09f_at	PsAffx.psMA010xD09f	-	-	1e+0	At1g07985	Expressed protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.95	GmaAffx.31414.1.A1_at	BI786718	-	-	3e-1	At5g03990	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.95	PsAffx.psHB004xH08f_at	PsAffx.psHB004xH08f	-	-	5e+0	At3g61840	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.94	GmaAffx.15790.1.A1_at	CD405768	-	-	2e+0	At1g70790	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.95	GmaAffx.14280.1.S1_at	BM095066	-	-	1e-8	At1g22710	SUC2 (SUCROSE-PROTON SYMPORTER 2)	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.95	PsAffx.C34000064_at	PsAffx.C34000064	-	-	2e+0	At5g29560	calcium ion binding	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.95	GmaAffx.14602.1.S1_at	BM731566	-	-	2e-1	At3g45851	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	33.9	0.95	PsAffx.C3000160_s_at	PsAffx.C3000160	-	-	4e+0	At5g42860	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.3	98.2	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
4.3	97.5	GSM294431	86_2456.2J.R220P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1	97.3	GSM191087	Soybean_Cotyledon_II1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.9	97.1	GSM294423	79_2455.2J.R220L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5	96.6	GSM201099	Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.4	96.4	GSM294427	82_2447.2J.R119L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM191086	Soybean_Cotyledon_HI2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.2	96.0	GSM294428	83_2450.2J.R161P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM294422	78_2467.2J.R216U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage