Co-expression analysis

Gene ID	PsAffx.psHA003iE02r_s_at
Gene name
Homology with Arabidopsis	Similar to At4g14465: DNA-binding protein-related (HF=7e-5)
Module size	6 genes
NF	0.39
%ile	68.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.47	66.6	0.96	PsAffx.psHA003iE02r_s_at	PsAffx.psHA003iE02r	-	-	7e-5	At4g14465	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.97	Gma.10928.2.S1_a_at	BF009414	-	-	3e-43	At5g62890	permease, putative	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.97	GmaAffx.80884.1.S1_at	BM188324	MYB transcription factor MYB51	-	2e+0	At5g58900	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.97	GmaAffx.75395.1.S1_at	AW099354	-	-	4e-12	At2g03480	dehydration-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.97	GmaAffx.87850.1.S1_at	BU080614	-	-	6e-14	At5g47020	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.19	23.7	0.97	GmaAffx.91339.1.S1_at	CF807064	-	-	1e-9	At1g14720	XTR2 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE RELATED 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.1	95.8	GSM293879	30_2202.2E.R190P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.79475.1.S1_x_at, orthologous to the query gene, PsAffx.psHA003iE02r_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.2	TaAffx.79475.1.S1_x_at	At4g14465	-	-	2e-1	At1g02040	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.73	89.1	TaAffx.79475.1.S1_at	At4g14465	-	-	2e-1	At1g02040	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.55	76.8	Ta.8629.1.A1_at	At4g14465	lipid transfer protein	-	2e-2	At3g60647	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	62.2	Ta.1042.1.S1_x_at	At4g14465	-	-	5e-8	At5g08380	AtAGAL1 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 1)	O.I.	H.G.	S.X.	Please select
0.17	19.8	Ta.5048.1.S1_at	At4g14465	-	-	2e-2	At2g39320	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.	Please select
0.13	14.6	Ta.9525.3.S1_x_at	At4g14465	-	-	2e-2	At5g66980	transcriptional factor B3 family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage