Co-expression analysis

Gene ID	PsAffx.CL590Contig1_at
Gene name
Homology with Arabidopsis	Similar to At5g01410: RSR4 (REDUCED SUGAR RESPONSE 4) (HF=2e-3)
Module size	35 genes
NF	0.56
%ile	86.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	98.9	0.89	PsAffx.CL590Contig1_at	PsAffx.CL590Contig1	-	-	2e-3	At5g01410	RSR4 (REDUCED SUGAR RESPONSE 4)	O.I.	H.G.	S.X.	Please select
0.78	90.6	0.91	PsAffx.C35000092_at	PsAffx.C35000092	-	-	2e+0	At5g62720	integral membrane HPP family protein	O.I.	H.G.	S.X.	Please select
0.76	89.7	0.93	PsAffx.CL869Contig1_at	PsAffx.CL869Contig1	-	-	2e+0	At3g06145	unknown protein	O.I.	H.G.	S.X.	Please select
0.75	89.5	0.93	PsAffx.C257000015_s_at	PsAffx.C257000015	-	-	2e+0	At4g01750	RGXT2 (rhamnogalacturonan xylosyltransferase 2)	O.I.	H.G.	S.X.	Please select
0.74	89.2	0.92	PsAffx.C277000003_s_at	PsAffx.C277000003	-	-	8e-2	At3g15060	AtRABA1g (Arabidopsis Rab GTPase homolog A1g)	O.I.	H.G.	S.X.	Please select
0.73	88.9	0.91	PsAffx.C244000010_at	PsAffx.C244000010	-	-	6e+0	At5g33390	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.71	87.8	0.91	PsAffx.CL238Contig1_at	PsAffx.CL238Contig1	-	-	5e-1	At4g13075	RALFL30 (RALF-LIKE 30)	O.I.	H.G.	S.X.	Please select
0.71	87.8	0.91	PsAffx.CL728Contig1_at	PsAffx.CL728Contig1	-	-	1e+0	At1g23205	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.91	PsAffx.psMA018xC19f_s_at	PsAffx.psMA018xC19f	-	-	4e+0	At5g53250	AGP22 (ARABINOGALACTAN PROTEIN 22)	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.92	PsAffx.CL2381Contig1_at	PsAffx.CL2381Contig1	-	-	3e+0	At3g13882	structural constituent of ribosome	O.I.	H.G.	S.X.	Please select
0.64	83.4	0.94	PsAffx.C173000014_at	PsAffx.C173000014	-	-	3e-1	At2g45800	LIM domain-containing protein	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.91	PsAffx.CL2360Contig1_at	PsAffx.CL2360Contig1	-	-	2e-1	At5g20010	RAN-1	O.I.	H.G.	S.X.	Please select
0.58	78.8	0.92	PsAffx.psHB020xH07f_at	PsAffx.psHB020xH07f	-	-	9e+0	At4g29590	methyltransferase	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.91	PsAffx.CL1344Contig1_at	PsAffx.CL1344Contig1	-	-	1e+0	At3g57450	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	78.2	0.93	GmaAffx.80926.1.S1_s_at	BE584193	-	-	1e+1	At3g02310	SEP2 (SEPALLATA 2)	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.92	PsAffx.C180000014_at	PsAffx.C180000014	-	-	9e-2	At5g07600	oleosin / glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.54	74.8	0.93	PsAffx.C103000011_at	PsAffx.C103000011	-	-	4e+0	At5g63905	unknown protein	O.I.	H.G.	S.X.	Please select
0.54	74.8	0.90	PsAffx.C21000053_at	PsAffx.C21000053	-	-	1e+0	At5g57590	BIO1 (biotin auxotroph 1)	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.94	PsAffx.CL1226Contig1_at	PsAffx.CL1226Contig1	-	-	2e+0	At1g12440	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.92	PsAffx.C114000033_s_at	PsAffx.C114000033	-	-	1e+0	At4g26580	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.94	PsAffx.CL716Contig1_at	PsAffx.CL716Contig1	-	-	2e+0	At3g01020	ISU2 (ISCU-LIKE 2)	O.I.	H.G.	S.X.	Please select
0.49	68.3	0.92	PsAffx.CL719Contig1_at	PsAffx.CL719Contig1	-	-	5e-1	At4g30880	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.49	68.3	0.91	PsAffx.CL182Contig1_at	PsAffx.CL182Contig1	-	-	2e-1	At5g46795	MSP2 (microspore-specific promoter 2)	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.91	PsAffx.C135000021_at	PsAffx.C135000021	-	-	4e-2	At5g42790	PAF1	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.92	PsAffx.psML007xF23f_s_at	PsAffx.psML007xF23f	-	-	1e-1	At4g34230	ATCAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5)	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.93	PsAffx.C106000006_at	PsAffx.C106000006	-	-	3e-1	At1g77960	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.94	PsAffx.C55000025_s_at	PsAffx.C55000025	-	-	5e-1	At3g10400	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.93	PsAffx.CL994Contig1_at	PsAffx.CL994Contig1	-	-	5e+0	At5g10050	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.92	PsAffx.CL429Contig1_at	PsAffx.CL429Contig1	-	-	3e-1	At3g06040	ribosomal protein L12 family protein	O.I.	H.G.	S.X.	Please select
0.41	58.1	0.93	PsAffx.CL1305Contig1_at	PsAffx.CL1305Contig1	-	-	7e+0	At3g63260	ATMRK1	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.92	PsAffx.C200000014_at	PsAffx.C200000014	-	-	1e-1	At3g14130	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.94	PsAffx.CL1416Contig1_at	PsAffx.CL1416Contig1	-	-	1e-8	At2g34250	protein transport protein sec61, putative	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.93	PsAffx.psZG004xK03f_s_at	PsAffx.psZG004xK03f	-	-	7e-4	At1g77710	-	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.93	PsAffx.C190000012_at	PsAffx.C190000012	-	-	7e+0	At4g14740	phosphoinositide binding	O.I.	H.G.	S.X.	Please select
0.28	39.0	0.94	GmaAffx.30928.1.S1_s_at	BE583905	-	-	2e-1	At3g06545	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.1	99.3	GSM294303	54_3153.2I.R9I2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.3	99.1	GSM171703	4_W.E.I.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
8.1	99.0	GSM171675	28_W.I.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
8.1	99.0	GSM171611	13_W.E.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
7.1	98.8	GSM171680	29_Y.F.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
7.0	98.8	GSM294092	4_3111.2G.R9G1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.9	98.8	GSM171660	24_Y.I.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.8	98.7	GSM171693	31_Z.I.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.4	98.6	GSM171619	15_W.F.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.0	98.5	GSM293015	20_1089.1N.R055L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.8	98.4	GSM171664	25_Y.E.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.8	98.4	GSM171677	28_Z.E.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.8	98.4	GSM293113	28_C047.1O.R9O2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.8	98.4	GSM171606	12_V.I.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.6	98.3	GSM171646	21_V.E.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.6	98.3	GSM171725	9_Z.F.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.5	98.3	GSM294151	16_3139.2H.R9H3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.5	98.3	GSM292384	59_C093.1F.R9F1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.4	98.2	GSM171712	6_Y.L.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.3	98.2	GSM171634	19_V.F.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.2	98.1	GSM171720	8_Y.E.I.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.1	98.1	GSM293226	15_C065.1P.R9P2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.1	98.1	GSM293213	93_C039.1O.SLO1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0	98.0	GSM292966	44_C221.1M.R9M1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0	98.0	GSM292405	9_C101.1F.R9F2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0	98.0	GSM293756	88_2113.2C.R285L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0	98.0	GSM294262	20_2405.2I.R084L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.9	98.0	GSM293071	71_1055.1N.R032L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.8	97.9	GSM171599	10_W.I.M.3, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.7	97.8	GSM293080	7_C033.1N.R9N3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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