Co-expression analysis

Gene ID	PsAffx.CL385Contig2_s_at
Gene name
Homology with Arabidopsis	Similar to At2g20875: EPF1 (EPIDERMAL PATTERNING FACTOR 1) (HF=4e+0)
Module size	24 genes
NF	0.41
%ile	71.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.89	93.5	0.83	PsAffx.CL385Contig2_s_at	PsAffx.CL385Contig2	-	-	4e+0	At2g20875	EPF1 (EPIDERMAL PATTERNING FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.89	PsAffx.C1000204_at	PsAffx.C1000204	-	-	9e+0	At5g46770	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.90	PsAffx.psMC011xM02f_at	PsAffx.psMC011xM02f	-	-	1e+1	At5g27400	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.88	PsAffx.CL1623Contig1_at	PsAffx.CL1623Contig1	-	-	1e+0	At3g53200	AtMYB27 (myb domain protein 27)	O.I.	H.G.	S.X.	Please select
0.51	72.3	0.91	PsAffx.CL1536Contig1_s_at	PsAffx.CL1536Contig1	-	-	2e+1	At5g16453	-	O.I.	H.G.	S.X.	Please select
0.49	68.3	0.90	PsAffx.C148000016_at	PsAffx.C148000016	-	-	6e-5	At2g36250	FTSZ2-1	O.I.	H.G.	S.X.	Please select
0.49	68.3	0.90	PsAffx.C95000059_at	PsAffx.C95000059	-	-	2e+0	At5g15640	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.	Please select
0.49	68.3	0.88	PsAffx.C24000008_at	PsAffx.C24000008	-	-	1e-2	At1g15730	PRLI-interacting factor L, putative	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.90	PsAffx.C3000224_at	PsAffx.C3000224	-	-	4e-2	At1g22220	F-box family protein	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.90	PsAffx.C114000056_at	PsAffx.C114000056	-	-	8e-4	At3g06400	CHR11 (CHROMATIN-REMODELING PROTEIN 11)	O.I.	H.G.	S.X.	Please select
0.41	58.1	0.90	PsAffx.CL190Contig1_at	PsAffx.CL190Contig1	-	-	5e+0	At5g07950	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	58.1	0.90	PsAffx.psMY007iE09r_s_at	PsAffx.psMY007iE09r	-	-	3e+0	At4g24590	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.92	PsAffx.C143000013_at	PsAffx.C143000013	-	-	2e+0	At5g49800	-	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.92	PsAffx.C200000014_at	PsAffx.C200000014	-	-	1e-1	At3g14130	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.91	PsAffx.CL860Contig1_at	PsAffx.CL860Contig1	-	-	8e-2	At2g40510	40S ribosomal protein S26 (RPS26A)	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.90	PsAffx.C71000078_at	PsAffx.C71000078	-	-	2e+0	At1g26340	CB5-A (CYTOCHROME B5 ISOFORM A)	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.90	PsAffx.CL1169Contig1_at	PsAffx.CL1169Contig1	-	-	5e+0	At1g15400	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	47.2	0.91	PsAffx.C135000021_at	PsAffx.C135000021	-	-	4e-2	At5g42790	PAF1	O.I.	H.G.	S.X.	Please select
0.34	47.2	0.92	PsAffx.C197000019_at	PsAffx.C197000019	-	-	1e+0	At4g35490	MRPL11 (MITOCHONDRIAL RIBOSOMAL PROTEIN L11)	O.I.	H.G.	S.X.	Please select
0.34	47.2	0.90	PsAffx.CL2251Contig1_at	PsAffx.CL2251Contig1	-	-	4e+0	At3g07425	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.91	PsAffx.CL1471Contig1_at	PsAffx.CL1471Contig1	-	-	3e-1	At3g29780	RALFL27 (ralf-like 27)	O.I.	H.G.	S.X.	Please select
0.20	25.1	0.92	PsAffx.C29000074_at	PsAffx.C29000074	-	-	5e+0	At5g35475	-	O.I.	H.G.	S.X.	Please select
0.19	23.7	0.92	PsAffx.CL869Contig1_at	PsAffx.CL869Contig1	-	-	2e+0	At3g06145	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	16.3	0.92	PsAffx.CL2381Contig1_at	PsAffx.CL2381Contig1	-	-	3e+0	At3g13882	structural constituent of ribosome	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.1	99.0	GSM171675	28_W.I.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
7.7	99.0	GSM171611	13_W.E.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
7.4	98.9	GSM171680	29_Y.F.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
7.4	98.9	GSM294303	54_3153.2I.R9I2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.1	98.8	GSM171693	31_Z.I.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
7.1	98.8	GSM171660	24_Y.I.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.8	98.7	GSM171619	15_W.F.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.8	98.7	GSM171703	4_W.E.I.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.3	98.6	GSM293113	28_C047.1O.R9O2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.2	98.6	GSM294092	4_3111.2G.R9G1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.1	98.5	GSM171664	25_Y.E.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.0	98.5	GSM171677	28_Z.E.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.0	98.5	GSM171606	12_V.I.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.9	98.5	GSM171646	21_V.E.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.6	98.3	GSM171725	9_Z.F.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.6	98.3	GSM171634	19_V.F.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.5	98.3	GSM171712	6_Y.L.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.2	98.1	GSM171685	2_Z.L.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.1	98.1	GSM171720	8_Y.E.I.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.9	98.0	GSM293015	20_1089.1N.R055L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.8	97.9	GSM171599	10_W.I.M.3, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.8	97.9	GSM171719	8_W.L.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.7	97.8	GSM292966	44_C221.1M.R9M1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6	97.7	GSM171710	6_V.L.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.6	97.7	GSM292384	59_C093.1F.R9F1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3	97.5	GSM293213	93_C039.1O.SLO1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2	97.4	GSM294151	16_3139.2H.R9H3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1	97.3	GSM292405	9_C101.1F.R9F2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0	97.2	GSM171656	23_Y.E.M.3, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.0	97.2	GSM293071	71_1055.1N.R032L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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