Co-expression analysis

Gene ID	PsAffx.CL241Contig1_at
Gene name
Homology with Arabidopsis	Similar to At2g46820: PSI-P (PHOTOSYSTEM I P SUBUNIT) (HF=6e-1)
Module size	12 genes
NF	0.39
%ile	68.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	98.9	0.94	PsAffx.CL241Contig1_at	PsAffx.CL241Contig1	-	-	6e-1	At2g46820	PSI-P (PHOTOSYSTEM I P SUBUNIT)	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.96	PsAffx.CL566Contig1_at	PsAffx.CL566Contig1	-	-	3e-1	At1g65484	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.96	PsAffx.CL591Contig1_at	PsAffx.CL591Contig1	-	-	4e+0	At1g29590	eukaryotic translation initiation factor 4E, putative / eIF-4E, putative / eIF4E, putative / mRNA cap-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.96	PsAffx.CL863Contig1_at	PsAffx.CL863Contig1	-	-	8e+0	At4g09840	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.97	GmaAffx.80936.1.S1_s_at	BE588267	-	-	1e-2	At5g50080	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.96	PsAffx.CL1401Contig1_at	PsAffx.CL1401Contig1	-	-	2e-5	At3g56350	superoxide dismutase (Mn), putative / manganese superoxide dismutase, putative	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.96	PsAffx.CL2436Contig1_s_at	PsAffx.CL2436Contig1	-	-	5e-2	At5g59360	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.95	PsAffx.psHB044xB02f_at	PsAffx.psHB044xB02f	-	-	6e-1	At1g13480	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.97	PsAffx.CL2Contig12_at	PsAffx.CL2Contig12	-	-	8e-1	At2g42280	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.97	PsAffx.CL17Contig2_at	PsAffx.CL17Contig2	-	-	4e+1	At5g20160	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	O.I.	H.G.	S.X.	Please select
0.21	26.6	0.97	PsAffx.CL210Contig1_s_at	PsAffx.CL210Contig1	-	-	5e+0	At3g47490	HNH endonuclease domain-containing protein	O.I.	H.G.	S.X.	Please select
0.20	25.1	0.97	PsAffx.CL995Contig1_at	PsAffx.CL995Contig1	-	-	3e+0	At3g01970	WRKY45	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.0	99.4	GSM294303	54_3153.2I.R9I2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.2	99.2	GSM171703	4_W.E.I.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
8.7	99.1	GSM171675	28_W.I.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
8.2	99.0	GSM171611	13_W.E.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
7.2	98.9	GSM294092	4_3111.2G.R9G1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.0	98.8	GSM171693	31_Z.I.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
7.0	98.8	GSM171680	29_Y.F.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
7.0	98.8	GSM171619	15_W.F.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.9	98.8	GSM293015	20_1089.1N.R055L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.9	98.8	GSM171660	24_Y.I.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.3	98.6	GSM171677	28_Z.E.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.2	98.6	GSM294151	16_3139.2H.R9H3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.1	98.5	GSM171725	9_Z.F.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.0	98.5	GSM292384	59_C093.1F.R9F1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.0	98.5	GSM293113	28_C047.1O.R9O2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.9	98.5	GSM171606	12_V.I.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.9	98.5	GSM293756	88_2113.2C.R285L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.8	98.4	GSM171646	21_V.E.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.7	98.4	GSM293226	15_C065.1P.R9P2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.7	98.4	GSM171664	25_Y.E.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.7	98.4	GSM293213	93_C039.1O.SLO1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.6	98.3	GSM171634	19_V.F.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.4	98.2	GSM294262	20_2405.2I.R084L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.3	98.2	GSM292405	9_C101.1F.R9F2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.2	98.1	GSM292966	44_C221.1M.R9M1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.2	98.1	GSM293194	76_1133.1O.R084L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.2	98.1	GSM293294	77_C067.1P.R9P3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.1	98.1	GSM293080	7_C033.1N.R9N3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.1	98.1	GSM293071	71_1055.1N.R032L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0	98.0	GSM294150	15_3131.2H.R9H1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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