Co-expression analysis

Gene ID	PsAffx.CL1857Contig1_at
Gene name
Homology with Arabidopsis	Similar to At3g51880: HMGB1 (HIGH MOBILITY GROUP B 1) (HF=2e-5)
Module size	17 genes
NF	0.37
%ile	65.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	91.5	0.89	PsAffx.CL1857Contig1_at	PsAffx.CL1857Contig1	-	-	2e-5	At3g51880	HMGB1 (HIGH MOBILITY GROUP B 1)	O.I.	H.G.	S.X.	Please select
0.59	79.5	0.92	PsAffx.C114000033_s_at	PsAffx.C114000033	-	-	1e+0	At4g26580	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.56	78.2	0.91	PsAffx.C68000059_at	PsAffx.C68000059	-	-	2e-5	At4g39280	phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative	O.I.	H.G.	S.X.	Please select
0.45	63.9	0.92	PsAffx.CL719Contig1_at	PsAffx.CL719Contig1	-	-	5e-1	At4g30880	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.91	PsAffx.CL1471Contig1_at	PsAffx.CL1471Contig1	-	-	3e-1	At3g29780	RALFL27 (ralf-like 27)	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.92	PsAffx.CL357Contig1_at	PsAffx.CL357Contig1	-	-	7e+0	At4g24230	ACBP3 (ACYL-COA-BINDING DOMAIN 3)	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.92	PsAffx.C25000074_at	PsAffx.C25000074	-	-	2e+0	At1g75030	ATLP-3	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.92	PsAffx.CL666Contig1_at	PsAffx.CL666Contig1	-	-	2e+0	At4g28840	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.90	PsAffx.C21000034_at	PsAffx.C21000034	-	-	8e-1	At2g33835	FES1	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.91	PsAffx.psMA018xC19f_s_at	PsAffx.psMA018xC19f	-	-	4e+0	At5g53250	AGP22 (ARABINOGALACTAN PROTEIN 22)	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.92	PsAffx.CL3Contig12_at	PsAffx.CL3Contig12	-	-	2e+0	At5g02960	40S ribosomal protein S23 (RPS23B)	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.91	PsAffx.C203000005_s_at	PsAffx.C203000005	-	-	2e-1	At3g09032	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	33.9	0.93	PsAffx.CL2381Contig1_at	PsAffx.CL2381Contig1	-	-	3e+0	At3g13882	structural constituent of ribosome	O.I.	H.G.	S.X.	Please select
0.24	30.9	0.93	PsAffx.C106000006_at	PsAffx.C106000006	-	-	3e-1	At1g77960	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	30.9	0.94	PsAffx.C173000014_at	PsAffx.C173000014	-	-	3e-1	At2g45800	LIM domain-containing protein	O.I.	H.G.	S.X.	Please select
0.20	25.1	0.92	PsAffx.C25000083_s_at	PsAffx.C25000083	-	-	6e-2	At2g39795	mitochondrial glycoprotein family protein / MAM33 family protein	O.I.	H.G.	S.X.	Please select
0.14	17.5	0.94	PsAffx.CL885Contig1_at	PsAffx.CL885Contig1	-	-	1e-2	At3g62770	AtATG18a	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.5	99.3	GSM171675	28_W.I.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
10.0	99.3	GSM171611	13_W.E.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
8.9	99.2	GSM171680	29_Y.F.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
8.6	99.1	GSM171660	24_Y.I.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
8.6	99.1	GSM171693	31_Z.I.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
8.6	99.1	GSM171619	15_W.F.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
7.9	99.0	GSM294303	54_3153.2I.R9I2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.4	98.9	GSM171725	9_Z.F.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
7.3	98.9	GSM171606	12_V.I.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
7.2	98.9	GSM171664	25_Y.E.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
7.2	98.9	GSM171646	21_V.E.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
7.2	98.9	GSM171703	4_W.E.I.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
7.2	98.9	GSM171677	28_Z.E.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
7.0	98.8	GSM171634	19_V.F.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.7	98.7	GSM171712	6_Y.L.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.1	98.5	GSM294092	4_3111.2G.R9G1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.1	98.5	GSM171599	10_W.I.M.3, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
6.1	98.5	GSM171685	2_Z.L.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.8	98.4	GSM171719	8_W.L.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.7	98.4	GSM171710	6_V.L.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.2	98.1	GSM171720	8_Y.E.I.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.9	98.0	GSM293015	20_1089.1N.R055L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.9	98.0	GSM293113	28_C047.1O.R9O2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.8	97.9	GSM171656	23_Y.E.M.3, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.7	97.8	GSM292966	44_C221.1M.R9M1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6	97.7	GSM294151	16_3139.2H.R9H3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6	97.7	GSM171687	30_W.F.M.3, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.5	97.7	GSM292384	59_C093.1F.R9F1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4	97.6	GSM171671	27_W.E.M.3, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.3	97.5	GSM171676	28_Y.I.M.3, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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