Co-expression analysis

Gene ID	PsAffx.C85000047_at
Gene name
Homology with Arabidopsis	Similar to At3g21860: ASK10 (ARABIDOPSIS SKP1-LIKE 10) (HF=1e-1)
Module size	17 genes
NF	0.86
%ile	99.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.90	93.7	0.79	PsAffx.C85000047_at	PsAffx.C85000047	-	-	1e-1	At3g21860	ASK10 (ARABIDOPSIS SKP1-LIKE 10)	O.I.	H.G.	S.X.	Please select
0.94	99.2	0.82	HgAffx.11003.1.S1_at	CB824101	-	-	4e+0	At3g28630	-	O.I.	H.G.	S.X.	Please select
0.94	99.2	0.79	PsAffx.C1000175_at	PsAffx.C1000175	-	-	5e+0	At5g23290	PDF5 (PREFOLDIN 5)	O.I.	H.G.	S.X.	Please select
0.91	98.6	0.81	PsAffx.C115000050_s_at	PsAffx.C115000050	-	-	2e+0	At5g66490	unknown protein	O.I.	H.G.	S.X.	Please select
0.90	93.7	0.81	GmaAffx.55284.1.S1_at	BM108343	-	-	3e+0	At5g10390	histone H3	O.I.	H.G.	S.X.	Please select
0.90	93.7	0.85	HgAffx.5776.1.S1_at	CB826435	-	-	1e+0	At5g59030	COPT1 (copper transporter 1)	O.I.	H.G.	S.X.	Please select
0.89	93.5	0.83	PsAffx.C6000193_at	PsAffx.C6000193	-	-	1e+1	Atmg00450	-	O.I.	H.G.	S.X.	Please select
0.88	93.4	0.81	HgAffx.3013.1.S1_at	CK349173	-	-	3e-1	At1g66890	-	O.I.	H.G.	S.X.	Please select
0.88	93.4	0.82	PsAffx.C68000072_at	PsAffx.C68000072	-	-	4e+0	At2g41410	calmodulin, putative	O.I.	H.G.	S.X.	Please select
0.87	93.2	0.83	PsAffx.C63000067_at	PsAffx.C63000067	-	-	1e-1	At5g05150	AtATG18e	O.I.	H.G.	S.X.	Please select
0.86	93.0	0.81	PsAffx.C177000015_at	PsAffx.C177000015	-	-	2e-1	At4g25150	acid phosphatase, putative	O.I.	H.G.	S.X.	Please select
0.86	93.0	0.81	HgAffx.17742.1.S1_at	CB278735	-	-	1e+0	At5g05250	unknown protein	O.I.	H.G.	S.X.	Please select
0.79	90.8	0.82	HgAffx.24315.1.S1_at	CB374815	-	-	9e-1	At4g15930	microtubule motor	O.I.	H.G.	S.X.	Please select
0.77	90.3	0.82	PsAffx.C154000024_at	PsAffx.C154000024	-	-	2e-1	At5g62160	AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.69	86.8	0.83	PsAffx.C2000250_at	PsAffx.C2000250	-	-	7e-1	At5g53180	PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.69	86.8	0.82	PsAffx.C129000013_at	PsAffx.C129000013	-	-	1e-3	At2g36100	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.81	PsAffx.C47000085_at	PsAffx.C47000085	-	-	2e+0	At1g04350	2-oxoglutarate-dependent dioxygenase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
45.9	99.9	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1	97.3	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM293082	81_C019.1N.R9N1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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