Co-expression analysis

Gene ID	PsAffx.C85000035_at
Gene name
Homology with Arabidopsis	Similar to At4g20006: unknown protein (HF=9e+0)
Module size	30 genes
NF	0.41
%ile	71.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.85	92.8	0.81	PsAffx.C85000035_at	PsAffx.C85000035	-	-	9e+0	At4g20006	unknown protein	O.I.	H.G.	S.X.	Please select
0.66	84.0	0.88	PsAffx.C117000036_at	PsAffx.C117000036	-	-	2e+0	At2g33620	DNA-binding family protein / AT-hook protein 1 (AHP1)	O.I.	H.G.	S.X.	Please select
0.64	83.4	0.88	PsAffx.C19000111_at	PsAffx.C19000111	-	-	1e+0	At4g38670	pathogenesis-related thaumatin family protein	O.I.	H.G.	S.X.	Please select
0.64	83.4	0.86	PsAffx.C279000007_at	PsAffx.C279000007	-	-	3e+0	At5g21274	CAM6 (CALMODULIN 6)	O.I.	H.G.	S.X.	Please select
0.54	74.8	0.90	PsAffx.C112000050_s_at	PsAffx.C112000050	-	-	2e-1	At5g54250	ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4)	O.I.	H.G.	S.X.	Please select
0.52	73.1	0.87	PsAffx.C1324000001_s_at	PsAffx.C1324000001	-	-	2e+0	At1g52230	PSAH2 (PHOTOSYSTEM I SUBUNIT H2)	O.I.	H.G.	S.X.	Please select
0.51	72.3	0.90	PsAffx.C29000088_s_at	PsAffx.C29000088	-	-	7e-1	At4g16610	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.90	PsAffx.CL982Contig1_at	PsAffx.CL982Contig1	-	-	2e+1	At5g06240	emb2735 (embryo defective 2735)	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.91	PsAffx.CL2001Contig1_at	PsAffx.CL2001Contig1	-	-	4e+0	At1g25250	AtIDD16 (Arabidopsis thaliana Indeterminate(ID)-Domain 16)	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.92	PsAffx.CL2324Contig1_at	PsAffx.CL2324Contig1	-	-	9e-1	At5g51650	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.88	PsAffx.C25000003_at	PsAffx.C25000003	-	-	6e-1	At5g55140	ribosomal protein L30 family protein	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.92	PsAffx.C67000061_s_at	PsAffx.C67000061	-	-	8e-1	At5g52200	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.87	PsAffx.CL2008Contig1_at	PsAffx.CL2008Contig1	-	-	1e+0	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	O.I.	H.G.	S.X.	Please select
0.41	58.1	0.92	GmaAffx.35370.1.S1_s_at	BE583805	-	-	1e+1	At5g47455	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.94	PsAffx.C103000011_at	PsAffx.C103000011	-	-	4e+0	At5g63905	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.92	PsAffx.CL730Contig1_at	PsAffx.CL730Contig1	-	-	4e+0	At5g37260	RVE2 (REVEILLE 2)	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.89	PsAffx.C246000022_at	PsAffx.C246000022	-	-	5e-2	At3g09700	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.87	PsAffx.C1000261_at	PsAffx.C1000261	-	-	1e-15	At5g10980	histone H3	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.89	PsAffx.C290000001_at	PsAffx.C290000001	-	-	9e-4	At4g16640	matrix metalloproteinase, putative	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.90	PsAffx.psHB039xB14f_s_at	PsAffx.psHB039xB14f	-	-	2e-4	At1g14060	-	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.90	PsAffx.C45000041_at	PsAffx.C45000041	-	-	6e+0	At3g48140	senescence-associated protein, putative	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.92	PsAffx.CL728Contig1_at	PsAffx.CL728Contig1	-	-	1e+0	At1g23205	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.95	PsAffx.CL1416Contig1_at	PsAffx.CL1416Contig1	-	-	1e-8	At2g34250	protein transport protein sec61, putative	O.I.	H.G.	S.X.	Please select
0.26	33.9	0.93	PsAffx.CL182Contig1_at	PsAffx.CL182Contig1	-	-	2e-1	At5g46795	MSP2 (microspore-specific promoter 2)	O.I.	H.G.	S.X.	Please select
0.26	33.9	0.91	PsAffx.C45000042_at	PsAffx.C45000042	-	-	8e+0	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.91	PsAffx.CL776Contig1_at	PsAffx.CL776Contig1	-	-	3e+0	At5g10330	HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.91	PsAffx.CL860Contig1_at	PsAffx.CL860Contig1	-	-	8e-2	At2g40510	40S ribosomal protein S26 (RPS26A)	O.I.	H.G.	S.X.	Please select
0.21	26.6	0.92	PsAffx.CL447Contig1_at	PsAffx.CL447Contig1	-	-	9e-2	At4g21740	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	25.1	0.88	PsAffx.C276000009_at	PsAffx.C276000009	-	-	4e-2	At1g71480	nuclear transport factor 2 (NTF2) family protein	O.I.	H.G.	S.X.	Please select
0.18	22.3	0.95	PsAffx.C257000015_s_at	PsAffx.C257000015	-	-	2e+0	At4g01750	RGXT2 (rhamnogalacturonan xylosyltransferase 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.8	98.7	GSM294303	54_3153.2I.R9I2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.8	98.4	GSM171703	4_W.E.I.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.2	98.1	GSM293113	28_C047.1O.R9O2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.9	98.0	GSM244890	36_SLO.I2W2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
4.8	97.9	GSM293015	20_1089.1N.R055L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.8	97.9	GSM171608	12_Y.E.I.3, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.7	97.8	GSM293080	7_C033.1N.R9N3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6	97.7	GSM294151	16_3139.2H.R9H3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5	97.7	GSM293408	90_C079.1Q.R9Q2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5	97.7	GSM293226	15_C065.1P.R9P2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4	97.6	GSM292405	9_C101.1F.R9F2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4	97.6	GSM294092	4_3111.2G.R9G1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3	97.5	GSM292384	59_C093.1F.R9F1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2	97.4	GSM293756	88_2113.2C.R285L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1	97.3	GSM294169	32_3137.2H.R9H2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0	97.2	GSM293553	67_3017.2A.R9A3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0	97.2	GSM244791	13_SLO.I2W1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.9	97.1	GSM244778	10_CON.I2W2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.8	97.0	GSM171675	28_W.I.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
3.8	97.0	GSM293294	77_C067.1P.R9P3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM293248	35_1155.1P.R097L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM244874	32_CON.I2W4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.7	96.8	GSM171632	18_W.E.I.3, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
3.7	96.8	GSM293071	71_1055.1N.R032L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM293577	9_3009.2A.R9A2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM293194	76_1133.1O.R084L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM293213	93_C039.1O.SLO1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM292364	35_C097.1F.SLF2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM294262	20_2405.2I.R084L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM244920	5_VP9.I5L2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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