Co-expression analysis

Gene ID	PsAffx.C8000052_at
Gene name
Homology with Arabidopsis	Similar to At2g15280: reticulon family protein (RTNLB10) (HF=4e-1)
Module size	6 genes
NF	0.19
%ile	41.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.43	60.6	0.89	PsAffx.C8000052_at	PsAffx.C8000052	-	-	4e-1	At2g15280	reticulon family protein (RTNLB10)	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.87	PsAffx.C145000027_at	PsAffx.C145000027	-	-	1e+0	At3g28220	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.88	PsAffx.psMA013xH08f_at	PsAffx.psMA013xH08f	-	-	4e+0	At5g54095	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.88	PsAffx.C242000008_at	PsAffx.C242000008	-	-	3e+0	At5g36900	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	26.6	0.88	PsAffx.C45000036_at	PsAffx.C45000036	-	-	7e-1	At1g20930	CDKB2	O.I.	H.G.	S.X.	Please select
0.07	10.2	0.88	PsAffx.C190000010_at	PsAffx.C190000010	-	-	3e+0	At2g18010	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
19.7	99.7	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
12.3	99.5	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.9	99.4	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.6	99.4	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
10.9	99.4	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.6	99.2	GSM293082	81_C019.1N.R9N1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.5	98.7	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
6.2	98.6	GSM244813	18_VP9.I5U4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
5.4	98.2	GSM293195	77_1130.1O.R082P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2	97.4	GSM292162	15-1002.1A.R001P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM292167	21-1019.1A.R011L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM308560	Mature Soybean (Glycine max) pollen grains Replicate 3	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
3.5	96.6	GSM147945	Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.4	96.4	GSM292229	25_C029.1B.R9B2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM292169	24_1018.1A.R010P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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