Co-expression analysis

Gene ID	PsAffx.C77000017_at
Gene name
Homology with Arabidopsis	Similar to At3g63400: peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein (HF=3e-1)
Module size	6 genes
NF	0.13
%ile	32.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.67	PsAffx.C77000017_at	PsAffx.C77000017	-	-	3e-1	At3g63400	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.89	PsAffx.C8000052_at	PsAffx.C8000052	-	-	4e-1	At2g15280	reticulon family protein (RTNLB10)	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.83	PsAffx.C38000019_at	PsAffx.C38000019	-	-	2e-1	At2g02061	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.88	PsAffx.psMA013xH08f_at	PsAffx.psMA013xH08f	-	-	4e+0	At5g54095	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.88	PsAffx.C145000027_at	PsAffx.C145000027	-	-	1e+0	At3g28220	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.03	5.8	0.86	PsAffx.psZS003xA01f_at	PsAffx.psZS003xA01f	-	-	5e+0	At5g22650	HD2B (HISTONE DEACETYLASE 2B)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.9	99.7	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.4	99.2	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.0	99.2	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.9	99.2	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.5	98.9	GSM293082	81_C019.1N.R9N1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.8	98.7	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.8	97.9	GSM244813	18_VP9.I5U4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
4.6	97.7	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
4.4	97.6	GSM293195	77_1130.1O.R082P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM292229	25_C029.1B.R9B2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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