Co-expression analysis

Gene ID	PsAffx.C68000072_at
Gene name
Homology with Arabidopsis	Similar to At2g41410: calmodulin, putative (HF=4e+0)
Module size	6 genes
NF	0.75
%ile	96.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.85	PsAffx.C68000072_at	PsAffx.C68000072	-	-	4e+0	At2g41410	calmodulin, putative	O.I.	H.G.	S.X.	Please select
0.80	91.5	0.88	HgAffx.5776.1.S1_at	CB826435	-	-	1e+0	At5g59030	COPT1 (copper transporter 1)	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.86	PsAffx.C47000085_at	PsAffx.C47000085	-	-	2e+0	At1g04350	2-oxoglutarate-dependent dioxygenase, putative	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.88	PsAffx.C154000024_at	PsAffx.C154000024	-	-	2e-1	At5g62160	AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.88	HgAffx.24315.1.S1_at	CB374815	-	-	9e-1	At4g15930	microtubule motor	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.85	PsAffx.C6000193_at	PsAffx.C6000193	-	-	1e+1	Atmg00450	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
46.6	99.9	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2	97.4	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM293082	81_C019.1N.R9N1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the grape gene, 1610393_at, orthologous to the query gene, PsAffx.C68000072_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.68	88.0	1610393_at	At2g41410	hypothetical protein LOC100265545	-	4e-12	At3g11400	eukaryotic translation initiation factor 3G / eIF3g	O.I.	H.G.	S.X.	Please select
0.63	84.3	1618002_s_at	At2g41410	hypothetical protein LOC100260795	-	3e-48	At2g27030	CAM5 (CALMODULIN 5)	O.I.	H.G.	S.X.	Please select
0.62	83.3	1612977_at	At2g41410	hypothetical protein LOC100266745	-	5e-53	At3g60250	CKB3	O.I.	H.G.	S.X.	Please select
0.57	79.8	1619907_at	At2g41410	similar to 26S proteasome subunit RPN5b	-	3e-26	At5g64760	RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)	O.I.	H.G.	S.X.	Please select
0.56	79.4	1622788_at	At2g41410	hypothetical protein LOC100262286	-	1e-1	At3g15355	UBC25 (UBIQUITIN-CONJUGATING ENZYME 25)	O.I.	H.G.	S.X.	Please select
0.55	77.3	1614904_at	At2g41410	hypothetical protein LOC100250638	-	4e-16	At3g61140	FUS6 (FUSCA 6)	O.I.	H.G.	S.X.	Please select
0.48	68.8	1619569_at	At2g41410	hypothetical protein LOC100250036	-	2e-30	At2g26590	adhesion regulating molecule family	O.I.	H.G.	S.X.	Please select
0.48	68.8	1610278_s_at	At2g41410	hypothetical protein LOC100259495	-	5e-38	At4g33250	EIF3K (EUKARYOTIC TRANSLATION INITIATION FACTOR 3K)	O.I.	H.G.	S.X.	Please select
0.44	64.1	1612407_at	At2g41410	hypothetical protein LOC100248505	-	1e-14	At1g26670	VTI1B	O.I.	H.G.	S.X.	Please select
0.44	64.1	1607141_at	At2g41410	hypothetical protein LOC100254376	-	1e-77	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	O.I.	H.G.	S.X.	Please select
0.41	58.7	1622560_at	At2g41410	hypothetical protein LOC100265315	-	3e-27	At3g52850	VSR1 (VACUOLAR SORTING RECEPTOR HOMOLOG 1)	O.I.	H.G.	S.X.	Please select
0.41	58.7	1615911_at	At2g41410	hypothetical protein LOC100243469	-	2e-66	At3g57290	EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E)	O.I.	H.G.	S.X.	Please select
0.41	58.7	1616088_at	At2g41410	-	-	1e-48	At5g58060	YKT61	O.I.	H.G.	S.X.	Please select
0.39	54.9	1620975_at	At2g41410	hypothetical protein LOC100258366	-	7e-55	At1g11890	SEC22	O.I.	H.G.	S.X.	Please select
0.37	51.7	1622714_at	At2g41410	hypothetical protein LOC100254120	-	2e-12	At2g30880	pleckstrin homology (PH) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	1613231_at	At2g41410	hypothetical protein LOC100257518	-	4e-88	At5g20890	chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.32	43.1	1611040_at	At2g41410	hypothetical protein LOC100263053	-	3e-7	At1g65020	-	O.I.	H.G.	S.X.	Please select
0.29	37.7	1607648_s_at	At2g41410	hypothetical protein LOC100241287	-	1e-7	At1g08480	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	1618864_at	At2g41410	similar to ribosomal protein L10a	-	5e-56	At1g08360	60S ribosomal protein L10A (RPL10aA)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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