Co-expression analysis

Gene ID	PsAffx.C66000076_at
Gene name
Homology with Arabidopsis	Similar to At3g13960: AtGRF5 (GROWTH-REGULATING FACTOR 5) (HF=2e-1)
Module size	10 genes
NF	0.02
%ile	9.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.33	46.1	0.66	PsAffx.C66000076_at	PsAffx.C66000076	-	-	2e-1	At3g13960	AtGRF5 (GROWTH-REGULATING FACTOR 5)	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.90	GmaAffx.84324.1.S1_at	AI759883	-	-	4e-2	At1g72010	TCP family transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.94	GmaAffx.16516.1.S1_at	BI969235	-	-	8e-6	At3g02250	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.85	GmaAffx.57982.1.S1_at	BE658737	MYB transcription factor MYB99	-	9e-21	At3g27810	ATMYB21 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 21)	O.I.	H.G.	S.X.	Please select
0.21	26.6	0.93	GmaAffx.85985.1.S1_at	CA852568	-	-	3e-1	At5g02000	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	13.0	0.92	GmaAffx.75481.3.S1_at	BU091049	-	-	2e+0	At3g57000	nucleolar essential protein-related	O.I.	H.G.	S.X.	Please select
0.10	13.0	0.93	Gma.13143.1.S1_at	CD412103	-	-	2e+0	At3g58340	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.09	12.0	0.84	GmaAffx.38748.1.S1_at	BE821199	-	-	2e-9	At3g18060	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.04	7.0	0.91	GmaAffx.64349.1.S1_at	BI974993	-	-	1e-15	At3g55140	pectate lyase family protein	O.I.	H.G.	S.X.	Please select
-	1.4	0.69	PsAffx.C221000011_at	PsAffx.C221000011	-	-	6e-1	At3g63470	scpl40 (serine carboxypeptidase-like 40)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
25.5	99.8	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
24.0	99.8	GSM308560	Mature Soybean (Glycine max) pollen grains Replicate 3	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
22.2	99.8	GSM308559	Mature Soybean (Glycine max) pollen grains Replicate 2	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
6.5	98.7	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM244813	18_VP9.I5U4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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