Co-expression analysis

Gene ID	PsAffx.C63000067_at
Gene name
Homology with Arabidopsis	Similar to At5g05150: AtATG18e (HF=1e-1)
Module size	6 genes
NF	0.75
%ile	97.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.85	PsAffx.C63000067_at	PsAffx.C63000067	-	-	1e-1	At5g05150	AtATG18e	O.I.	H.G.	S.X.	Please select
0.80	91.5	0.86	HgAffx.11003.1.S1_at	CB824101	-	-	4e+0	At3g28630	-	O.I.	H.G.	S.X.	Please select
0.73	88.9	0.88	HgAffx.5776.1.S1_at	CB826435	-	-	1e+0	At5g59030	COPT1 (copper transporter 1)	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.86	PsAffx.C6000193_at	PsAffx.C6000193	-	-	1e+1	Atmg00450	-	O.I.	H.G.	S.X.	Please select
0.63	82.9	0.85	HgAffx.24315.1.S1_at	CB374815	-	-	9e-1	At4g15930	microtubule motor	O.I.	H.G.	S.X.	Please select
0.56	78.2	0.85	PsAffx.C47000085_at	PsAffx.C47000085	-	-	2e+0	At1g04350	2-oxoglutarate-dependent dioxygenase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
46.6	99.9	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2	97.4	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM293082	81_C019.1N.R9N1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.1050.1.A1_at, orthologous to the query gene, PsAffx.C63000067_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	ZmAffx.1050.1.A1_at	At5g05150	-	-	3e+0	At4g35025	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	Zm.14718.1.S1_at	At5g05150	-	-	3e-21	At4g39800	MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.46	58.4	Zm.4647.1.A1_at	At5g05150	-	-	6e-3	At2g31370	bZIP transcription factor (POSF21)	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.5388.1.S1_at	At5g05150	hypothetical protein LOC100193632	-	6e-23	At3g09180	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.19053.1.S1_at	At5g05150	hypothetical protein LOC100193386	-	2e+0	Atmg01020	-	O.I.	H.G.	S.X.	Please select
0.43	52.8	Zm.19271.1.A1_at	At5g05150	hypothetical protein LOC100274689	-	3e-4	At1g17980	nucleotidyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	Zm.19091.1.S1_at	At5g05150	fiber protein Fb2	-	2e+0	At3g06820	mov34 family protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.6418.1.S1_at	At5g05150	hypothetical protein LOC100216693	-	2e-1	At3g44580	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	37.2	Zm.4006.1.A1_at	At5g05150	hypothetical protein LOC100216950	-	2e+0	At4g22530	embryo-abundant protein-related	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.18478.1.S1_at	At5g05150	-	-	1e+1	At4g16400	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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