CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PsAffx.C63000067_at

Gene name
Homology with Arabidopsis Similar to At5g05150: AtATG18e (HF=1e-1)

Module size 6 genes

NF 0.75

%ile 97.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.6 0.85 PsAffx.C63000067_at PsAffx.C63000067 - - 1e-1 At5g05150 AtATG18e O.I. H.G. S.X.
0.80 91.5 0.86 HgAffx.11003.1.S1_at CB824101 - - 4e+0 At3g28630 - O.I. H.G. S.X.
0.73 88.9 0.88 HgAffx.5776.1.S1_at CB826435 - - 1e+0 At5g59030 COPT1 (copper transporter 1) O.I. H.G. S.X.
0.67 86.1 0.86 PsAffx.C6000193_at PsAffx.C6000193 - - 1e+1 Atmg00450 - O.I. H.G. S.X.
0.63 82.9 0.85 HgAffx.24315.1.S1_at CB374815 - - 9e-1 At4g15930 microtubule motor O.I. H.G. S.X.
0.56 78.2 0.85 PsAffx.C47000085_at PsAffx.C47000085 - - 2e+0 At1g04350 2-oxoglutarate-dependent dioxygenase, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
46.6 99.9 GSM292923 95_1465.1L.R283L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2 97.4 GSM294268 23_2428.2I.R297P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7 96.8 GSM292448 49_C110.1G.V7G1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6 96.7 GSM292838 18_C211.1L.SLL3L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3 96.2 GSM293641 68_2065.2B.R129U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2 96.0 GSM293082 81_C019.1N.R9N1U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the wheat gene, Ta.9798.1.S1_at, orthologous to the query gene, PsAffx.C63000067_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.72 88.3 Ta.9798.1.S1_at At5g05150 - - 1e-26 At1g22450 COX6B (CYTOCHROME C OXIDASE 6B) O.I. H.G. S.X.
0.68 86.5 Ta.13823.1.S1_a_at At5g05150 - - 7e+0 At4g18500 unknown protein O.I. H.G. S.X.
0.65 83.9 Ta.2612.2.S1_x_at At5g05150 - - 2e-3 At1g72020 unknown protein O.I. H.G. S.X.
0.61 82.0 Ta.2234.1.S1_at At5g05150 Succinate dehydrogenase subunit 3 - 2e+0 At2g10550 - O.I. H.G. S.X.
0.61 82.0 Ta.2294.1.S1_x_at At5g05150 - - 6e+0 At4g37682 - O.I. H.G. S.X.
0.61 82.0 Ta.3097.1.S1_at At5g05150 - - 2e-7 At5g66510 GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3) O.I. H.G. S.X.
0.61 82.0 Ta.15275.1.S1_at At5g05150 - - 5e-5 At5g15090 VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) O.I. H.G. S.X.
0.61 82.0 Ta.2294.1.S1_at At5g05150 - - 6e+0 At4g37682 - O.I. H.G. S.X.
0.57 79.2 Ta.23771.1.S1_at At5g05150 - - 1e-35 At1g22840 CYTC-1 (CYTOCHROME C-1) O.I. H.G. S.X.
0.56 78.6 Ta.2188.1.S1_x_at At5g05150 - - 1e+0 At4g28020 unknown protein O.I. H.G. S.X.
0.53 74.9 Ta.2444.1.S1_at At5g05150 F1-ATPase - 7e-1 At2g24520 AHA5 (Arabidopsis H(+)-ATPase 5) O.I. H.G. S.X.
0.52 73.7 Ta.3309.3.S1_x_at At5g05150 - - 2e-11 At5g47570 unknown protein O.I. H.G. S.X.
0.48 69.0 Ta.2612.1.S1_x_at At5g05150 - - 2e-3 At1g72020 unknown protein O.I. H.G. S.X.
0.44 64.5 Ta.2188.2.S1_x_at At5g05150 - - 4e-1 At1g60987 SCRL5 (SCR-Like 5) O.I. H.G. S.X.
0.44 64.5 Ta.28170.2.S1_x_at At5g05150 - - 4e-1 At4g36750 quinone reductase family protein O.I. H.G. S.X.
0.41 59.6 Ta.3135.1.S1_at At5g05150 - - 2e-6 At1g04630 MEE4 (maternal effect embryo arrest 4) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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